Scaffold Ga0212093_1000029

Overview

Basic Information

• Taxon OID: 3300022554
• Scaffold ID: Ga0212093_1000029
• Source Dataset Name: Dewar_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 611488
• Total Scaffold Genes: 626
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 415 (66.29%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Sediment → Unclassified → Hot Spring Sediment → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: British Columbia
• Coordinates
  • Lat. (^o): 49.9543
  • Long. (^o): -116.5155

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002493	Metagenome / Metatranscriptome	554	Y
F007214	Metagenome / Metatranscriptome	355	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212093_1000029285	F007214	GGAGG	MHGLSLARLPLSARVFCTLALVGLGLGNLAAVTQAATTVGLAPAAVQASLAPEMPMTHLGHGPTSAEQEIDLAQLGQQARVWIRTPLLIQTSHTHLFGQTLIAGLLGVIFLLAAVPERLKALIVALPFVGTILDIGGMWLTRFVSPALAWVVIAGGGLFALGYLLIAAISLHQLWLRRERVA
Ga0212093_100002965	F002493	GGAGG	MAEITQQTTSAETQSQDLAARVRAIRARLPGQMLSERVEMARLHYGPLYTLAQLQERIGRTLPFRFGFIRTATLEPIESYRPRIPDEALLKWDDAVQKGIFDKFWVAVPAYFRERQSDPWIVGEISGAGLFAVIARWDE