NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212124_10131607

Scaffold Ga0212124_10131607


Overview

Basic Information
Taxon OID3300022553 Open in IMG/M
Scaffold IDGa0212124_10131607 Open in IMG/M
Source Dataset NamePowell_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1387
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCanada: British Columbia
CoordinatesLat. (o)50.0621Long. (o)-124.7214Alt. (m)Depth (m)150
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000441Metagenome / Metatranscriptome1136Y
F023347Metagenome / Metatranscriptome210Y
F050377Metagenome / Metatranscriptome145Y

Sequences

Protein IDFamilyRBSSequence
Ga0212124_101316072F050377AGGAMATTQTTREFLKTQGITVGKRGRFSAAALGAISKAVQEGVVFSDTKNAK
Ga0212124_101316074F000441GAGMKITDKYLNEQLDKAQKLLWGGSETENIEAHNIISKLIYDRIEQVHL
Ga0212124_101316076F023347N/AGELKNLMLIAEKDLTSALEQEELSEEAMDSMVRTECEGRLDMLVELYQLTYQLSFAIQEKIDFGFANEA

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