Scaffold Ga0212124_10071815

Overview

Basic Information

• Taxon OID: 3300022553
• Scaffold ID: Ga0212124_10071815
• Source Dataset Name: Powell_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1988
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: British Columbia
• Coordinates
  • Lat. (^o): 50.0621
  • Long. (^o): -124.7214
  • Depth (m): 150

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032299	Metagenome / Metatranscriptome	180	Y
F078800	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212124_100718152	F032299	AGGAG	MPKITQPGRKMYETPQITADQLATEMYGGDAPTHTDIIKSANARAQKRHEMKGQHVADVGVLPDSAEMTHNEMVGVRNNGYLAKKGLEFGVNAFYNSLPPGMDIEDQENSDIRKIEMNVYEGGIGYPGDGWVYRASGSQMPNTKDMGRPGMTNDVPSKKI
Ga0212124_100718153	F078800	AGGAG	MPKVVQEKFQINYPDKGSSAENQHGWLTDMEARAKKGMPGREGLPGGDGSNRMMNNAAFFNGLPPGMDIEDQEVSDIRKMGINIAGNMPSKYADGDLTNGELSAHSLRVGFDKKALLQTDDEYTREHNDAFYDDVGGFVERNNYLDRL