Scaffold Ga0212124_10044897

Overview

Basic Information

• Taxon OID: 3300022553
• Scaffold ID: Ga0212124_10044897
• Source Dataset Name: Powell_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2640
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: British Columbia
• Coordinates
  • Lat. (^o): 50.0621
  • Long. (^o): -124.7214
  • Depth (m): 150

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006542	Metagenome / Metatranscriptome	370	Y
F039568	Metagenome / Metatranscriptome	163	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212124_100448973	F006542	GAGG	MDETELSELMTAPGFFRFLARQAKLDAEEVKRIYMLGRPWGLWPPDLDVSREAAEAGVDVFTYLAALQPLLDMDTREKEAQLAVYEVTLTGGEAAQLIPAVRAQVEKVAALAKADEATICRVFHALYAYRQRVGRLSIQKVGESSKHKVEQDQAVAIEKLQRALAAEIEQRKNLP
Ga0212124_100448974	F039568	GAG	VAQEPSQSAVNSPGFVTFAKCFCINPVYVNPVYGGGHYKKRNGWVLIDLATRGETNFKTLRDARHHLMCLYMETTPKIIPAAGL