Scaffold Ga0212124_10038078

Overview

Basic Information

• Taxon OID: 3300022553
• Scaffold ID: Ga0212124_10038078
• Source Dataset Name: Powell_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2913
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: British Columbia
• Coordinates
  • Lat. (^o): 50.0621
  • Long. (^o): -124.7214
  • Depth (m): 150

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000311	Metagenome / Metatranscriptome	1326	Y
F000714	Metagenome / Metatranscriptome	924	Y
F001125	Metagenome / Metatranscriptome	769	Y
F007470	Metagenome / Metatranscriptome	350	Y
F047650	Metagenome / Metatranscriptome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212124_100380783	F001125	GGAG	MGDRANFGFRDSRENVVFLYGHWAGHNMLAKLANAVQAAESRWQDDSYATRICISNLIGEDWTQTTGWGIYINQLGDNEHKVPVIDWKNQTFTLYEEDLSTVVFSTSLTSFVDKYSRLVM
Ga0212124_100380784	F047650	GGAG	MNSEDINPIYYCDSCSVAQASHLIKLLDGELSFCGHHYFKNKEALDKQSYETIQLNKAEEAIPQLTKAE
Ga0212124_100380785	F007470	GAG	MFLNTKQRDIKGDTMDYQDGFQDGVKFAREVIINNLRLWAETSDDGGVMDEIGDRIEFGVINYEL
Ga0212124_100380786	F000311	GAG	MYFELTAPDRLSLEMAYWDAQITGLDPTFMPPLTFNVGTGSIEKVSRIRDKYNLTESYVSEYETTGY
Ga0212124_100380787	F000714	N/A	SPLPTKEEKMETTETTVPDTYNANLLVTYKVIHGYSDATYETDKVASIEWSLHNGRQSQKQVTTLLSKINTVKDIITEAYEDSDDKETLRAIAEALDIELVREVQFTASVEVSGTYSFNILESDYDFDLESEVTDALYADSNNGNIQIDDTEVCNVRES