Scaffold Ga0212118_10042135

Overview

Basic Information

• Taxon OID: 3300022552
• Scaffold ID: Ga0212118_10042135
• Source Dataset Name: Guaymas_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2752
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Mexico: Guaymas Basin, Gulf of California
• Coordinates
  • Lat. (^o): 27.0078
  • Long. (^o): -111.4071
  • Depth (m): 2000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036512	Metagenome	169	N
F040420	Metagenome	161	Y
F102256	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0212118_100421353	F040420	N/A	MKIPTLLVIGILLSLSLHQFLIVDTTDFRPYIDGNYVCRDFSRDLILSASKYHIYLDYVYVPEKNHMMVGLYNPLEGSIEIIEPQTDEIKGYVKEDNKNYIRIPVWNDCFYFSNIKIA
Ga0212118_100421354	F036512	GGAGG	MYWKVPNYLKKYVRIQDMLRNIFRPCDCGEELKKCVKDKKYFAKRAETLSRALAKSINLPEPPDPSEGMEEVNPWKLIGKYGKYDILTADKYYYTLPLNTWIKILSSIQIQVEKILPKWRVDVADCDDYALLMASFVAAVFAKPYYDKQVAFAITWSHSHAYNSFITSEGTWEIYEPQSNAIVGRLGKTTGIYKTEKIWFMG
Ga0212118_100421355	F102256	N/A	MSSSKIRVYSCRNCYLEFYYENYITHCPFCGNKVKYVGQIQKNEIEGPIYTLKYSTGERMQKKIEEEEAIREAEESWYLWED