Scaffold Ga0212118_10033696

Overview

Basic Information

• Taxon OID: 3300022552
• Scaffold ID: Ga0212118_10033696
• Source Dataset Name: Guaymas_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3106
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Mexico: Guaymas Basin, Gulf of California
• Coordinates
  • Lat. (^o): 27.0078
  • Long. (^o): -111.4071
  • Depth (m): 2000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014691	Metagenome	260	N
F017081	Metagenome	242	Y
F019588	Metagenome	228	N
F040421	Metagenome	161	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212118_100336961	F017081	N/A	CILGTLILLVATAQAIDITEITATETQIKITIANATSSGYIFVSPSNTSFPYAYSHQGNGTYRITATFLKPNNTYYVKACDNENCSNVVSVNVSKEEELLEQNFTAPFNNLMQGGNLLNISKLGETIPSVYTSLLTDMFWAIFFGGIFLAYWIRQEDVMLPSIVGMIGGVAMIGLLPPSAQHIAYILLVISIAGTLYTIIKARR
Ga0212118_100336964	F014691	AGGAGG	MKGIGFVSAILILMFVVVGVFTLSIAWSEIPVEPQANTSLANTSTIIPTLTSFLPYIALVVIVAMAIGVFLSLVRGR
Ga0212118_100336965	F040421	GAGG	MREESMRAITILTLAFIIGFKSIILFLQHSFGFAFTLFLLAWTCICFAFPDQLIGASIGQDLKLGEVIEKWARRRELKRK
Ga0212118_100336966	F019588	GGAGG	MGEEKRIEEEVKEVLERLKVPYSVEIVIVDDKSGKVVFRWRRGRGNLVKGMQKTIEVLDRKMGI