Scaffold Ga0212118_10029613

Overview

Basic Information

• Taxon OID: 3300022552
• Scaffold ID: Ga0212118_10029613
• Source Dataset Name: Guaymas_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3336
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (54.55%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Mexico: Guaymas Basin, Gulf of California
• Coordinates
  • Lat. (^o): 27.0078
  • Long. (^o): -111.4071
  • Depth (m): 2000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F056227	Metagenome	137	N
F098395	Metagenome	103	Y
F100149	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0212118_1002961310	F100149	N/A	MYWSKEEEEILKSLWKKPDVTAKIIKEQHLPHRTINAIQKKASSLGLTKEKIKIDYEKVNEIIL
Ga0212118_1002961311	F098395	N/A	MKIEIITPLDLEDFVKRIESLEEDSKLHDGLLHDVFENIDQMKKRLNELEKQIKHLESDREPYLKNNVLE
Ga0212118_100296138	F056227	N/A	MEDKDNQVLVFHRDKDDKNWISRLANGKIAILHRADPTTPQPNVPYLCKVDEKEKYAIAWIQSLHAYPRAIITPPPRRFVYIGAPGEKPAIHTDILSIFDTHGLEYLYVKYPQENREEVKVPSTENYRDVNIDIRIKIGSESTIKYSCIIKRPRNMDAKTILDEIKSKIE