Scaffold Ga0212118_10021863

Overview

Basic Information

• Taxon OID: 3300022552
• Scaffold ID: Ga0212118_10021863
• Source Dataset Name: Guaymas_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3939
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Mexico: Guaymas Basin, Gulf of California
• Coordinates
  • Lat. (^o): 27.0078
  • Long. (^o): -111.4071
  • Depth (m): 2000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016098	Metagenome	249	Y
F016235	Metagenome	248	Y
F024940	Metagenome	203	Y
F024941	Metagenome	203	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0212118_100218632	F024941	AGGAGG	MAYYFWGRLGITKGEEYRKLLERAWNLGWSQRRFFREARSRGLGYAEALMREDWHRFGYVESARTYEGKLRCHIFFDEVVKKLREEEKWTWSEIREFLKERKQPTKWTPETKAKEIVFEKYAKQAFPELYP
Ga0212118_100218633	F016235	AGGAGG	MSEEKISSSPPLFSHKKGRHRHGYQKCVAFVGIDKNDDYFGEGFPLCAVIKFKHPIYRYTPRTYELARLLATLKILYGEEYMEELLTWTELEYVRMRRRAEWLTIFGDGSE
Ga0212118_100218635	F024940	AGGAGG	MEREIIYKKIRSIKQLREFITDYLIEHSEMRTKAMLSQNTFVIAYEQGFLDALKTIRDLLSKEGLLMYRYVFEEKREREEDEHRDTF
Ga0212118_100218637	F016098	GGAGG	MSEERKVVYMRKTQSGNGVRIRDGEIVYIASIRSLEAFLQGEQEFVAFAKMPYRKIPNEDSARNLIYTWCDKCQGLRFFRKIVKDKWRCEMCGTERTARELIEKVRSILESD