Scaffold Ga0212118_10020395

Overview

Basic Information

• Taxon OID: 3300022552
• Scaffold ID: Ga0212118_10020395
• Source Dataset Name: Guaymas_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4090
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Mexico: Guaymas Basin, Gulf of California
• Coordinates
  • Lat. (^o): 27.0078
  • Long. (^o): -111.4071
  • Depth (m): 2000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016098	Metagenome	249	Y
F024940	Metagenome	203	Y
F024941	Metagenome	203	N
F040961	Metagenome	160	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0212118_100203952	F024941	GAG	MGGIGIYAYEEASRMAYAFWGRLGITKGEEYRKLLEKAWNLGWSQRQFFREARARGLGYAEGLMREDWHRFGYVGRARTYEGKLTQHVFFDEVVRKLHDKEGWSWKEIKEFLNERKDPRKWTPETKVKERIYKSYLREALPEKADT
Ga0212118_100203953	F040961	GAG	MVNAVECRWSEEQAKGLLTFLIAEKKRHERDIHNIERSIQRIKREFRFTDADIAKCEELAWLYVEF
Ga0212118_100203954	F024940	GAG	MEREIIHKKIRSIKELREFIIDYLIEHSEMRTKAMITANINVVFYEQGWMDALRTIRDLLSKEGLLMYRYTESEEEERAEDKNRDTF
Ga0212118_100203955	F016098	AGGAGG	MSEERRYVYMRKTKSGNGVRIRDGEIVYIASIRSLEAFLQGEREFVAFAKMPYRQIPNENNTRNLIYTWCDKCQGLRFFRKISEDRWRCEMCGTERTTTELIEKVRSILNEGEQ