Scaffold Ga0212118_10016900

Overview

Basic Information

• Taxon OID: 3300022552
• Scaffold ID: Ga0212118_10016900
• Source Dataset Name: Guaymas_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4534
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Mexico: Guaymas Basin, Gulf of California
• Coordinates
  • Lat. (^o): 27.0078
  • Long. (^o): -111.4071
  • Depth (m): 2000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014691	Metagenome	260	N
F017081	Metagenome	242	Y
F019588	Metagenome	228	N
F040421	Metagenome	161	Y
F055335	Metagenome	138	N
F058593	Metagenome	134	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0212118_1001690010	F058593	N/A	DHYTVILTPVTSSIVSSEDYITFNLSYEIIDDEINLSLTYNDSLNQTKNLTFFVYNSTTLLYQQNFTNTSNVSVSYTVPYKAGEEYMWGYSAFHSRFGEMGRSRVLRIAWFLDLGISRAYCTWIAIAIILFLTAMFSFTTVKFGYVAIPIVSLIFAFIGWLPNISIIIIALCLGILAYMSKREKEVGV
Ga0212118_100169003	F019588	GGAGG	MGEEERIEEEVREVLERLRVPYSVEIVIVDDESGKVVFRWRRGRGNLVRGMQKTIEVLDRKIGIPVRDLLK
Ga0212118_100169004	F040421	GAGG	MREESVRVITMLTLAFTIGFKSIILFFQHSFGFAFTLFLLAWTCFCFAFPDNLIGASIGQDLKLGEVIEKWVKRRELKRK
Ga0212118_100169005	F014691	GGAGG	MSRGIGFVSAILILMFIVVAVFTLSIAWSEIPVEPQADTSLANTSTIIPTLTSFLPYIALVMILAMAIGVFLSLVRVK
Ga0212118_100169008	F017081	GGAG	MVERGRKLWWKGVCIFGALILFIATAQAIDITEITATEAQIKVTIANATSSGYIFVSPTNKSFPYAYSHQGNGTYTITATFLKVNTTYYVKACDNENCSNVVSVNVSEEEKLVEQNFTAPFNNLMQGGNLLNISKLGETIPSVYTSLLTDMFWAMFFGGIFLAYWIRQEDVMLPSIVGMIGGVAMIGLLPPSAQHIAYILLVISIAGTLYTIIKARR
Ga0212118_100169009	F055335	AGGAGG	MRAYDILLFLVCLEATIGFISSLHVFPVNYVDASAVQTPADWNLQEVENQTASQSIFDKVMLATDMLFKALSMFLNMLVAIVAIYIPLTSVLGVPSEIALLLQGVVYVVYMWAIIQFLSGRSVKYME