Scaffold Ga0212118_10009951

Overview

Basic Information

• Taxon OID: 3300022552
• Scaffold ID: Ga0212118_10009951
• Source Dataset Name: Guaymas_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6035
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (80.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Mexico: Guaymas Basin, Gulf of California
• Coordinates
  • Lat. (^o): 27.0078
  • Long. (^o): -111.4071
  • Depth (m): 2000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014691	Metagenome	260	N
F019588	Metagenome	228	N
F019935	Metagenome	226	Y
F040421	Metagenome	161	Y
F046123	Metagenome	151	Y
F072934	Metagenome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0212118_1000995111	F019935	AGG	VLLWVEMPKVKETANRTVVHVGDLWKRYHKASPKTKRRWKFRIKDVGRLRHSELILCKPPNGKWQTYAWSFSKGQVKKGKRKLLIYDAKAFEILQKLKENGDLRGWKLAFKG
Ga0212118_1000995114	F046123	GAGG	MPCPYKEGSEYCWLCWYWIEAEEKCIFDEDDPEREFLLIDEFKNIDPKIYKERMEWLKGLGLMSLYRAVKAGMVKEQRTLGDFGLAVMSHE
Ga0212118_100099513	F014691	GGAGG	MKGIGFVSAILILMFVVVAVFTLSIAWSEIPVEPQTNTSLANTSTIIPTLTSFLPYLALVVILAMAIGVFLSLVGVR
Ga0212118_100099514	F040421	GGTGG	MREERVRAITMLMLAFIIGFKSIILFLQHSFGFAFALFLLAWTCICFAFPDNLIGASIGQDLKLGEVIEKWVRRRELRRE
Ga0212118_100099515	F019588	GGAGG	MGEEKRIEEGVKEVLERLKVPYSVEIVIVDDESGKVVFRWRRGRGNLVKGMQKTIEVLDRKMGIPVKDLLK
Ga0212118_100099519	F072934	GGAGG	MAEIDIDKLLADEEIRGKMNGWNREKAKRRLESMKNLSEPHRRYLEKIASGEWKVW