Scaffold Ga0212118

Basic Information
Taxon OID	3300022552 Open in IMG/M
Scaffold ID	Ga0212118_10007848 Open in IMG/M
Source Dataset Name	Guaymas_combined assembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300022552 Open in IMG/M

Scaffold ID

Ga0212118_10007848 Open in IMG/M

Source Dataset Name

Guaymas_combined assembly

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6887
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (100.00%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

6887

Total Scaffold Genes

12 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

12 (100.00%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location Name	Mexico: Guaymas Basin, Gulf of California
Coordinates	Lat. (^o)	27.0078	Long. (^o)	-111.4071	Alt. (m)	Depth (m)	2000
Location on Map

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Source Dataset Sampling Location

Location Name

Mexico: Guaymas Basin, Gulf of California

Coordinates

Lat. (^o)

27.0078

Long. (^o)

-111.4071

Alt. (m)

Depth (m)

2000

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016098	Metagenome	249	Y
F016235	Metagenome	248	Y
F024940	Metagenome	203	Y
F024941	Metagenome	203	N
F091133	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212118_100078481	F091133	GGAGG	LGIFDIWDTWTDWLGDWWDAFKDKLSDIKAELWGWVDDIAKYWVKQADMFFDILKHTWSEVEDLMEDAKSYADDIVTDAVLCIDNWIQTFGETVAELWNKLEPYVSGLITPIQNALDTIQNIKIPSLEDITNTLKTTVDNVVNWDIPFLNQSVSDLWKEANEIWNEIWNNIWTSLNNAWSDINNLWKTINEIPADVWNAITQGWEGFTDFLFEQGERFVEKILDIDIPVDDIIKDLERKFKGGEK
Ga0212118_1000784810	F016235	AGGAGG	MSEVKIPSSPPLFSHKKGRHRHGYQKCVAFVGIDKNDDYFGEGFPLCAVVKFKRPIYRYTPRTYELARLLATLKILYGEEYMEELLAWAELEYMRMRRRAEWLTLFGDGSE
Ga0212118_1000784811	F024941	AGGAGG	MAYAFWGRLGITKGEQFRQLLERAWNLGWSQRQFFREARARGLGYAEALMREDWHRFGYVESARTYHGKLRVHIFFDEVVKKLREEEGWTWSEIREFLKERKQPSKWTPETKAKEIVFEKYAKQAFPELYP
Ga0212118_100078486	F016098	GGAGG	MSEERKYVYMRKTQSGNGVRMRDGEIVYIASIRSLEAFLQGEREFVAFAKMPYRRIPNEDNARNLIYTWCDKCGGLRFFRKISEDKWRCEMCGTERTATELIEKVRSILEAD
Ga0212118_100078488	F024940	GGAGG	MEREMIYKKIRKVKELREFITDALIEHAERRGSALIHGNNNLFYYEQGFLDALKTIRDLLSKEGLLMYRYVFEEKREREEDEHRDTF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0212118_10007848

Overview

Ecosystem & Geography

Associated Families

Sequences