Scaffold Ga0212118_10005830

Overview

Basic Information

• Taxon OID: 3300022552
• Scaffold ID: Ga0212118_10005830
• Source Dataset Name: Guaymas_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8070
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (85.71%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Mexico: Guaymas Basin, Gulf of California
• Coordinates
  • Lat. (^o): 27.0078
  • Long. (^o): -111.4071
  • Depth (m): 2000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023017	Metagenome	211	Y
F029623	Metagenome	187	Y
F029954	Metagenome	186	N
F035145	Metagenome	172	Y
F050065	Metagenome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212118_1000583011	F035145	AGGAGG	LEKLSEFMRRDYNLKTIITEECCDLVRVEVICLTARTSFPLLSLTYNRHTDNFILTVERKFITQHSTLKALIEALESVKEVMPNGMEQIER
Ga0212118_1000583012	F050065	GGA	MNMLKATVSMEQQIMLAIAYLKGLLRDAKRRGDEEVARYIGEIIGVYEARLQSQNNNN
Ga0212118_1000583015	F029954	GAGG	MELRTKEYKFNDGERKVEYVIPPTNTPFFSVIFGKKGEVRMIAIHQRVLEYHEAVVLMSLLCGVIKNEERI
Ga0212118_100058304	F023017	GAG	MRLKKEKREEMKVKIIEFLKNADGHIASIPMLAKAIQASSPTAKSIVFELEVERRVSVVMLGGQYMVKLEELEEGV
Ga0212118_100058306	F029623	GAG	MNTYAKYVRARFERGNLIVEISKDAFKDAETRKEATKELQQIIKTYFGIRFFIRLSIVYAFTALFCACVALIIVLLK