Scaffold Ga0212118_10005653

Overview

Basic Information

• Taxon OID: 3300022552
• Scaffold ID: Ga0212118_10005653
• Source Dataset Name: Guaymas_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8208
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (37.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Mexico: Guaymas Basin, Gulf of California
• Coordinates
  • Lat. (^o): 27.0078
  • Long. (^o): -111.4071
  • Depth (m): 2000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038026	Metagenome	166	Y
F056227	Metagenome	137	N
F098395	Metagenome	103	Y
F100149	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0212118_1000565315	F056227	N/A	MEDKDNQVLVFHRDKDDKNWISRLANGKIAILHRADPTTPQPNVPYLCKVDEKEKYAIAWIQSLHAYPRAIITPPPRRFVYIGAPGEKPAIHTDILSIFDAHNLEYLYVKYPQENREEVKIPSTQNYRDVNIDIRIKIGSESTIKYSCTIKRPRNMDAKTILDEIKSKIE
Ga0212118_1000565317	F100149	N/A	MYWSKEEEEILRSLWKKPDITAKIIKERHLPHRTINAIQKKASSLGLTKEKIKIDYEKVNEIII
Ga0212118_1000565319	F098395	GAG	MKIEVIIPSDLEDFVKRIENLEEDNKLHDGLLHDVFENIDQMKKRLNELEKRIKHLESGREPYLKNNVLDE
Ga0212118_100056538	F038026	AGAAG	MIDKNEDEYILIIEYEDRAERLLASSLKDLVQVMADTTLYNFEGKSKYFEQSYHVKIEIM