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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300022552 Open in IMG/M |
| Scaffold ID | Ga0212118_10003530 Open in IMG/M |
| Source Dataset Name | Guaymas_combined assembly |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 10584 |
| Total Scaffold Genes | 22 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 19 (86.36%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (100.00%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Archaea | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Mexico: Guaymas Basin, Gulf of California | |||||||
| Coordinates | Lat. (o) | 27.0078 | Long. (o) | -111.4071 | Alt. (m) | Depth (m) | 2000 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F023017 | Metagenome | 211 | Y |
| F029954 | Metagenome | 186 | N |
| F035145 | Metagenome | 172 | Y |
| F042112 | Metagenome | 158 | N |
| F049343 | Metagenome | 146 | Y |
| F050065 | Metagenome | 145 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0212118_1000353012 | F049343 | AGGAGG | MEWSRLRDKLRKGEWYAFSAVCFLAGVVAGKGITVLGRAEPVLALTAVGAVLLAYWLALLTATIIAEIKEAPKTI |
| Ga0212118_1000353014 | F035145 | GGAG | MLERLSEFMRRDYNLKTVITEECCDLVRVEVICLTAKTSFPLLSLTYNRHTDNFILTIERKFITQHSTLKALIEALEEVREVIAKSA |
| Ga0212118_1000353015 | F050065 | GGAGG | MLKATVSMEQIMLAITYLKGLLRDAKRRGDRELVRYVGEIIGIYEARLQSQNSNN |
| Ga0212118_1000353018 | F029954 | AGG | MELRTKEYKFNDGERKVEYVIPPTNTPFFSVVFSKKGEVRMIAIHQRVLEYHEAVVLMSLLCGVIKNEERIQ |
| Ga0212118_100035303 | F042112 | GAGG | VKRKKMSYDDFSPSFLQEEKYISKLAYPHLLFIQIQKIMDSIDAGGDGKEELESLKALLKPSWRVEIDVKTERCRRGMEREISRIARVKERVGITTYKEMKRAAIVRYVREYVQHVIEKLDEVGLLLIEERGVLRGGGVML |
| Ga0212118_100035307 | F023017 | GAG | MRLKKEKREEMKQKIIEFLKNADGHIASIPMLAKAIHASSPTAKSIVWELEVERKVSVVMLGGEYVVKLEEKGVSRRDGWIRI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |