Scaffold Ga0212118_10003477

Overview

Basic Information

• Taxon OID: 3300022552
• Scaffold ID: Ga0212118_10003477
• Source Dataset Name: Guaymas_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10655
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (94.44%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Mexico: Guaymas Basin, Gulf of California
• Coordinates
  • Lat. (^o): 27.0078
  • Long. (^o): -111.4071
  • Depth (m): 2000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009582	Metagenome	315	Y
F011723	Metagenome	287	Y
F016098	Metagenome	249	Y
F016235	Metagenome	248	Y
F024940	Metagenome	203	Y
F024941	Metagenome	203	N
F028993	Metagenome	189	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0212118_1000347715	F009582	AGGGGG	MPVRRGRREFVSGTGRGVKEARVDVILQRLNENIGGEIKAYPSHIYRYGVNNIFQRSLAYLFGWKSNGEPHKVAVTNAGLLKVAMSGAGFEDIDTLTGTAGVNWSSSLSFAWTPNRIRFEALDYPYLAKFSRDGITWSDEIYVDAGMPRDFDINAKYVKVRRYGGTDAQYFIIGMR
Ga0212118_1000347716	F011723	AGGGGG	MVIYNKGLSRENSTDDGKTIFTLTSKEEEKYKVRRIVITDVNSNPLIMEVWVERDRICESIPLEVVSDLAPERVIDLDVDIPVGHTFSVKIKPQSSGNQGSVRGWVEYEIVE
Ga0212118_1000347718	F028993	AGGTGG	MVDIVEKAVKKRSERIAVSETYYKEGVESPTKDWLEQFKKAKDRRNAGLRKAMDEGLFEAGAERVGTEGWKEATLAKADRWLTGATSEVANRRYEERMRDVAECIERARKAVEGMPTTTIEQRAERSKRFQIEMSKCMEEKKRRR
Ga0212118_100034772	F024941	AGGAGG	MAYNFWGRLGITKGEEFRKLLEKAWNLGWSQREFYREVRARGLGYRESLMREDWHRFGYVESARTYEGKLTQHIFFDEVVKKLHDKEGWSWKEIKEFLNERKDPRRWTPETKVKEKIYKSYLREALPEKADT
Ga0212118_100034773	F016235	AGGAGG	MSEEKIPSSPPLFRHKKGRHRHGYQRCVEFVGIDKNDDYFGEGFPLCAVIKFKRSIYRYTPRTYELARLLATLKILYGEEYMEELNALAEVEYVRMRRRAEWLTIFGEDSE
Ga0212118_100034775	F024940	AGGAGG	MEREIIHKKIRSIKELREFITDYLIEHSEMRAKAMISANINAVFYEQGWMDALRTLRDLLSKEGLLMYRYVESEEQERAEDKNRDTI
Ga0212118_100034777	F016098	GGAGG	MSEERKFIYMRRTRSGNGVRMRDGEIVYIASIRSLEAFLQGEQEYVVFAKMPNRIIPNEGNARNLIYTWCDKCQGGRFFHKISEDKWKCEMCGTERTATELIEKVRLILECD