Scaffold Ga0212118_10003406

Overview

Basic Information

• Taxon OID: 3300022552
• Scaffold ID: Ga0212118_10003406
• Source Dataset Name: Guaymas_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10782
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (91.30%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → unclassified Methanomicrobia → Methanomicrobia archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Mexico: Guaymas Basin, Gulf of California
• Coordinates
  • Lat. (^o): 27.0078
  • Long. (^o): -111.4071
  • Depth (m): 2000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023017	Metagenome	211	Y
F035145	Metagenome	172	Y
F049343	Metagenome	146	Y
F066330	Metagenome	126	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0212118_1000340612	F049343	AGGAGG	VVRWSRLRDKLKRGEWYAFSAVCFLAGVVVGKGITTLGRAEPVLVLTGVGAVLLAYWLALLTATIIAEIKEAPKTI
Ga0212118_1000340615	F035145	AGGAGG	LEKLSAFMRRDYNLKTIITEECCDLMRVEVICFTAKTSFPLLSLTYNKLTDNFVLTIERKFITQHSTLKALIEALRGVEEVVRNDERRTERGDM
Ga0212118_1000340623	F066330	N/A	MAEGKRRKEGREVVVSVALPIEEYLRLEEAVMRKHGRKRGVFGEFVREAIKRAVDEVLQQ
Ga0212118_100034068	F023017	GAGG	MRLKKEKREQMKQKILEFLKNADGHIASIPMLARAIQASSPTAKSIVFELEVERRVSVVMLGGQYMVRLEEEV