Scaffold Ga0212118

Basic Information
Taxon OID	3300022552 Open in IMG/M
Scaffold ID	Ga0212118_10003335 Open in IMG/M
Source Dataset Name	Guaymas_combined assembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300022552 Open in IMG/M

Scaffold ID

Ga0212118_10003335 Open in IMG/M

Source Dataset Name

Guaymas_combined assembly

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	10923
Total Scaffold Genes	20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	19 (95.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

10923

Total Scaffold Genes

20 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

19 (95.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location Name	Mexico: Guaymas Basin, Gulf of California
Coordinates	Lat. (^o)	27.0078	Long. (^o)	-111.4071	Alt. (m)	Depth (m)	2000
Location on Map

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Source Dataset Sampling Location

Location Name

Mexico: Guaymas Basin, Gulf of California

Coordinates

Lat. (^o)

27.0078

Long. (^o)

-111.4071

Alt. (m)

Depth (m)

2000

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009582	Metagenome	315	Y
F011723	Metagenome	287	Y
F016235	Metagenome	248	Y
F024940	Metagenome	203	Y
F024941	Metagenome	203	N
F028993	Metagenome	189	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0212118_1000333517	F009582	GAG	MVRKRGRREFVGGTGRAIKEARVDVILQRVNEKIGSELDVSPSHIYRYGVNNIFQRTFAYLLGWKTNGEPQKVAVTEGGVLKVGISGAGFEDIDVLKGTATIEWSDVLEFDFVPNRIRFESLDYPYVAKFSKDNVTWSEEIYVDEGMPRDYDICARYIKVRRYGGTDAKYWIVGMR
Ga0212118_1000333518	F011723	GAGG	VIYNKGLSRDNSTDEGKTIFTLTSKEEEKYKVRRIVITDVNSNPLIMEVWVERDRIGENIPLEVASDLAPERVIDIDMEIPVGYTFSIKIKPQSSGNQGSVRGWVEYEIVG
Ga0212118_100033352	F024941	AGGAGG	MAYAFWGRLGLTRGEEYRKLLERAWNLGWSQRRFFREARERGLGYAEKLMREDWHRFGYVESARTYSGKLTQHVFFDEVVRKLHYEEGWSWKEIKEFLNERKEPERWTPETKVKERIYKSYLSEALPEKADT
Ga0212118_1000333520	F028993	AGG	MADIVEKAVKKRKERIAVSEAYYREGVEAPSKDWLEQFKKAKDRRNAGLRRAIEEGLFEKGAERVGTDGWKRATLAKADRWLTGATSTEAEENYASAMRDVAECIERARKAVEGMPTTTIEQRAEKSKRFQIEMAKCMEAKKRGR
Ga0212118_100033353	F016235	AGGAGG	MDKNKISSSPPLFSHKQWSHRRGYQKCVKYIGIDKNNERFGKGFPLCAVIKFRLPITRYTPRTHEIAKLLATLRLLYGEEYMEELSALAEIEYLKIRRRLKWLTHFGDGLD
Ga0212118_100033356	F024940	GAG	MEREIIHKKIRSIKELREFITDYLIEHSEMRTKAMLSQNTFVIAYEQGFLDALKTIRDLLSKEGLLMYRYVFEEKKEREEDENRDTF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0212118_10003335

Overview

Ecosystem & Geography

Associated Families

Sequences