Scaffold Ga0212118_10003307

Overview

Basic Information

• Taxon OID: 3300022552
• Scaffold ID: Ga0212118_10003307
• Source Dataset Name: Guaymas_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10964
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (88.24%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Mexico: Guaymas Basin, Gulf of California
• Coordinates
  • Lat. (^o): 27.0078
  • Long. (^o): -111.4071
  • Depth (m): 2000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007460	Metagenome	350	N
F014691	Metagenome	260	N
F015290	Metagenome	255	N
F017081	Metagenome	242	Y
F019935	Metagenome	226	Y
F024453	Metagenome	205	Y
F055335	Metagenome	138	N
F072934	Metagenome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0212118_100033071	F019935	AGG	MPKVKETANRIVVHVGDLWKRYHRASPKTKRRWKFRIKDVGRLKHSELMLCKPPNGKWQTYAWSFSKGQVKKGKRKLLIYDAKAFEILQKLKIKDFLIDEDTEW
Ga0212118_1000330711	F017081	GGAG	MVERRGKWWWKGICILGILTLFIATAQAIDITEITATEIQIKITIANATSSGYIFVSPSNTSFPYTYPHQGNGTYTITATFLKPNNTYYVKACDNENCSNVVCVNVSKEENLVEQNFTAPFNNLMQGGNLLNISKLGETIPSVYTSLLTDMFWAMFFGGIFLAYWIRQEDVMLPSIVGMISGVAMIGLLPPSAQHIAYILLVISIAGTLYTIIKARR
Ga0212118_1000330712	F055335	AGGAGG	MRAYDILLFLVCLEATIGFVSSLHVFPVDYVDASAVQTPADWNLQEVENQTASQSIFDKVMLATDMLFKALSIFFNMLVAIVAIYIPLTSVLGVPSEIALLLQGVVYVVYAWAIIQFLSGRSVKYME
Ga0212118_1000330714	F007460	AGGTGG	MDDEEGMGMGTAIFVVMLNIVFAIIFFFLVGSVMCGILPPLTSIVGIDETSPFAQALTVVPNLVNVFFYLPLIFIFTMFVWLFKYIVRRHKYTYYQQGGEEEEW
Ga0212118_1000330715	F015290	AGG	MLNNKGQAGEIAVFVILALMVAFAYIFVSPIVQNIKDVVPTIADATSWTNAQTQAMNWLFRAWYAYPLFAFIALLVWLIKRAIEKRSGEVV
Ga0212118_1000330716	F024453	AGGAGG	MKMEIPERDGIVMYFTILQNLAQRPDLTDLERQALDFASSLLYQSVYGEEISEIGEGGESGREEEIQKDMEKVRSVHELAQVRGGKC
Ga0212118_100033073	F072934	AGGGGG	MVEIDIDKLLADEEIREKMNEWNRETAKRRLESMKNLSEPHRRYLEKIASGEWKVW
Ga0212118_100033079	F014691	AGGAGG	MSRGIGFVSAILILMFMVVAVFTLSIAWSEIPVEPQANTSLANTSSIIPTLTSFLPYIALVVILAMAIGVFLSLVRVR