NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212118_10002849

Scaffold Ga0212118_10002849


Overview

Basic Information
Taxon OID3300022552 Open in IMG/M
Scaffold IDGa0212118_10002849 Open in IMG/M
Source Dataset NameGuaymas_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11874
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)27 (84.38%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin, Gulf of California
CoordinatesLat. (o)27.0078Long. (o)-111.4071Alt. (m)Depth (m)2000
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023017Metagenome211Y
F035145Metagenome172Y
F042112Metagenome158N
F050065Metagenome145Y
F066330Metagenome126N

Sequences

Protein IDFamilyRBSSequence
Ga0212118_100028491F066330AGGGGGMAEEEKRGKVVVSVALSVDEYLRLEEAVVRKHGRKWGVFSEFVREAIKKAVEEVLQQQK
Ga0212118_1000284912F050065GAGLSSQYQMRKNGVINMLKATASMEQIMLAITYLKGLLRDAKRRGDRELVEYVGEIIGIYEARLQPKNNNN
Ga0212118_1000284913F035145GGTGGLERLSEFMRRDYNLKTIITEECCDLVRVEVICLTARTSFPLLSLTYNRHTDNFVLTIERKFITQHSTLKALIEALENVREVIKGNASS
Ga0212118_1000284923F023017GGAGGVRLKKEKREEMKQKTLEFLKNTDGHIATIPMLARAIHASSPTAKSIVWELEVERKVSVVMLGGQYMVKLEELEEGV
Ga0212118_1000284928F042112GGAMTFDEYSSAFPLYEEKYISKLAYPHLLFIQIQKIMDRIDAGGDGKEELESLKALLKPSWRVEIDVKTERCRREMEREINRIARVKERVGITTYREMKRAAIVRYVREYVQHVIEKLDEVGLLLIEERGVLRGGGVML

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