Scaffold Ga0212118_10002182

Overview

Basic Information

• Taxon OID: 3300022552
• Scaffold ID: Ga0212118_10002182
• Source Dataset Name: Guaymas_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13732
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (72.00%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Associated Families: 10

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Mexico: Guaymas Basin, Gulf of California
• Coordinates
  • Lat. (^o): 27.0078
  • Long. (^o): -111.4071
  • Depth (m): 2000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007460	Metagenome	350	N
F014691	Metagenome	260	N
F017081	Metagenome	242	Y
F019588	Metagenome	228	N
F019935	Metagenome	226	Y
F024453	Metagenome	205	Y
F040421	Metagenome	161	Y
F046123	Metagenome	151	Y
F056226	Metagenome	137	N
F072934	Metagenome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0212118_100021821	F046123	N/A	CWYWIEAEEKCIFDEDDPEREFLLIDEFKDIDPKTYKERMEWLKGLGLMSLYRAVKAGMVKEQRTLGDFGLAVMSHE
Ga0212118_1000218214	F019588	GGAGG	MGGEKRIEEEVKEVLERLKVPYSVEIVIVDDKSGKVVFRWRRGRGNLVRGMQKTIEVLDRKMGIPVKDLLK
Ga0212118_1000218215	F040421	N/A	MREERVRAITMLTLAFTIGFKSIILFLQHSFGFAFTLFLLAWTCICFAFPDNLIGASIGQDLKLGEVIEKWVGRRELKRK
Ga0212118_1000218216	F014691	GGAGG	MKGIGFVSAILILMFVVVGVFTLSIAWSEIPVEPQANTSLANTSSIIPTLTSFLPYIALVVILAMAIGVFLSLVKMR
Ga0212118_1000218219	F017081	GGAG	MVERGRKWWWKGICILGTLILLVATAQAIDITEITATETQIKITIANATSSGYIFVSPSNTSFPYAYSHQGNGTYTITATFLKPNNTYYVKVCDNENCSDAISVNVSKEEELVEQNFTTQFNNLMQGGNLLNISKLGEAIPSVYTSLLTDMFWAMFFGVIFLAYWIRQEDVMLPSVTGLIAGSVLIVMLPPSAQHIAYILLVISIAGTLYTIIKARR
Ga0212118_1000218220	F056226	AGGAGG	MRAYDILLFLVCLEASIGFVASIDLFSTTYVDPSAVQLTDWNVQEIQNQSSEPSLLDTAIDGLVKAIPQFLNMLLAIAIVYIPLTQTLGVPMEVALLFQGAVYLIYVWAIIQFLSGRSVKYME
Ga0212118_1000218222	F007460	AGGTGG	MDDEEGMGVGTAIFVVMLNIVFAIIFFFLVGSVMCGILPPLTNVVGIGETSPFAQALTVVPNLVNVFFYLPLIFIFTMFVWLFKYIVKRHKYTYYQQGGEEEEW
Ga0212118_1000218224	F024453	AGGAGG	VKMEIPERDGIVMYFAILQNLSQRPDLTDLERQALDFASSLLYQSIYSEEISEVGEEVKSVREEGREGDMEKVRSVHELAQVRRANAEQQGASR
Ga0212118_100021827	F019935	AGG	MPKVKETASRTVVHVGDLWRRYHRASPKTKMRWKFRIKDVGRLKHSELILCKPPNGMWQTYAWSFSKGQVKKGKRKLLIYDAKAFEILQKLKENGDLRGWKLVFRGV
Ga0212118_100021829	F072934	GAGG	MVEIDIDKLLADEEIREKMNEWNREKAKRRLEGMKNLSKPHRRYLEKIASGEWKVW