Scaffold Ga0212118_10002106

Overview

Basic Information

• Taxon OID: 3300022552
• Scaffold ID: Ga0212118_10002106
• Source Dataset Name: Guaymas_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13939
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (90.48%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Mexico: Guaymas Basin, Gulf of California
• Coordinates
  • Lat. (^o): 27.0078
  • Long. (^o): -111.4071
  • Depth (m): 2000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007460	Metagenome	350	N
F014691	Metagenome	260	N
F015290	Metagenome	255	N
F017081	Metagenome	242	Y
F019935	Metagenome	226	Y
F024453	Metagenome	205	Y
F040421	Metagenome	161	Y
F056226	Metagenome	137	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0212118_1000210612	F040421	GAGG	MREESMREVTMLTLAFTIGFKSIILFLQHSFKLALTLFLLAWTCICFAFPDNLIGASIGQDLKLEEVIEKWAKKRELRRK
Ga0212118_1000210613	F014691	AGGAGG	MSRGIGFVSAILILMFVVVGVFTLSIAWSEIPVEPQANTSIATTSNIIPTLTSFLPYLALVVILAMAIGVFLSLVRVK
Ga0212118_1000210615	F017081	GGAG	MEERGRKWWWKGICILGMFAFLITTAQAIDITEITATETQIKITIANASSSGYIFISPSNTSFPYAYSHQGNGTYTITATFLKVNETYYVKACDNENCSDAMSVNISKEEKLVEQNFTAPFNNLMQGGNLLNISKLGETIPSVYTSLLTDMFWAMFFGGIFLAYWIRQEDVMLPSIVGLISGSVLIVMLPPSAQHIAYILLVISIAGTLYTIIKARR
Ga0212118_1000210616	F056226	AGGAGG	MRAYDILLFLVCLEASIGFVASIDLFSTTYVDPSAVQLTDWNVQEIQNQSSSPSLLDTAIDGLVKAIPQFLNMLLAIAIVYIPLTQTLGVPTEVALLFQGVVYLIYVWAIIQFLSGRSVKYME
Ga0212118_1000210618	F007460	AGGTGG	MDDEEGMGMGTAIFVVMLNIVFAIVFFFLVGSVMCGILPPLTNVVGIGETTPFAQALTLVPNLVSVFFYLPLIFIFTMFVWLFKYIVKRHKYTYYQQGGEEEEW
Ga0212118_1000210619	F015290	AGGAG	MLNNKGQAGEIAVFVILAFMVAFAYIFISPIVQNIKDVVPIIADATSWTNAQTQAMNWLFRAWYAYPFFAFIALLVWLIKRAIEKRSGEVV
Ga0212118_100021062	F019935	N/A	MPKVKETPNRVVVHIGDLWKRYHRASPKTRKRWQFRIKDVGRTKHSELILCKPPNKDWQVYAWSFSKRQVKKGKRRLVVYDVKAFEILQKLKENGELRGWKLVFRG
Ga0212118_1000210620	F024453	AGGAGG	VKMEIPERDGVVMYFAILQNLAQRPDLTDLERQALDFASSLLYQSVYGEEISEVGGEVKSVREEGREGDMEKVRSVHELAQVRRANAKQ