Scaffold Ga0212118_10001798

Overview

Basic Information

• Taxon OID: 3300022552
• Scaffold ID: Ga0212118_10001798
• Source Dataset Name: Guaymas_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15146
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (96.15%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (100.00%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Mexico: Guaymas Basin, Gulf of California
• Coordinates
  • Lat. (^o): 27.0078
  • Long. (^o): -111.4071
  • Depth (m): 2000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007460	Metagenome	350	N
F015290	Metagenome	255	N
F023017	Metagenome	211	Y
F024453	Metagenome	205	Y
F029623	Metagenome	187	Y
F035145	Metagenome	172	Y
F042112	Metagenome	158	N
F049343	Metagenome	146	Y
F050065	Metagenome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212118_1000179812	F023017	AGGAG	MKQRIIEFLKNEEGHIATIPTLAKAIQASPPTAKSIVWELEVERRVSVVMLGGQYMVKLEERVIKDDY
Ga0212118_1000179818	F042112	GGA	MTFDEYSSAFPQFEERYISKLAYPHLLFIQIQKIMDSIDAGGDGKEELESLKALLKPSWRVEIDVKTERCRREMEREINRIARVKERVGITTYKEMKRAAIVRYVREYVQHVIEKLDEVGLLLIEERGVLRGGGVML
Ga0212118_1000179822	F024453	AGGAGG	VKVEIPDRDAAVMYFAILQNLAQRPDLTDLERQALDFASSLLYQSIYSEEISEVMEGGESGREEEIQKDMEKVRSVHELAQVRRANAEQQRAGR
Ga0212118_1000179823	F015290	AGGAGG	MLNNKGQAGEIAVFVILVFMIAFAYIFISPIVQNIKDVVPTVADATSWTNAQTQAMNWLFRAWYAFPFFAFIALLVWLIKRAIERRSGEVV
Ga0212118_1000179824	F007460	AGGTGG	MDDEEGMGMGTAIFVVMLNIVFAIIFFFLVGSVMCGILPPLTNVVGISETSPFTQTLTVVPNLVNVFFYLPLIFIFTMFVWLFKYIVKRHKYTYYQQGGEEEEW
Ga0212118_100017984	F050065	GGA	MNMLKATVSIEQIMLAITYLKGLLRDAKRRGDRELVKYVGEIIGVYEARLQPQNNNN
Ga0212118_100017985	F035145	GGAG	MLEKLSEFMRRDYNLKTIITEECCDLVRVEVICLTARTSFPLLSLTYNRHTDNFILTVERKFITQQSTLKALIEALESVKEVMQNNGMEQIER
Ga0212118_100017986	F049343	AGGAGG	MEWSRLRDKLRKGEWFAFSAACFLAGVVAGKGITTLGRAEPVLALTAVGAVLLAYWLALLTATIIAEIKEAPKTI
Ga0212118_100017989	F029623	GAG	MNTYAKYVRARFERGNLIVEVSKDAFKDAETKKEATKELQQIIKTYFGIRFFIRLSIVYAFTALFCAFVALTIILVM