Scaffold Ga0212118_10001756

Overview

Basic Information

• Taxon OID: 3300022552
• Scaffold ID: Ga0212118_10001756
• Source Dataset Name: Guaymas_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15312
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (79.17%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Mexico: Guaymas Basin, Gulf of California
• Coordinates
  • Lat. (^o): 27.0078
  • Long. (^o): -111.4071
  • Depth (m): 2000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007460	Metagenome	350	N
F014691	Metagenome	260	N
F015290	Metagenome	255	N
F017081	Metagenome	242	Y
F019588	Metagenome	228	N
F019935	Metagenome	226	Y
F046123	Metagenome	151	Y
F055335	Metagenome	138	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0212118_1000175614	F019588	GGAGG	MSEERKIKEEAERILKELRVPYSVEIVIVDDESGKVVFRWRRGRGNLVKGMQKTIEILDRKIGIPVRDLLK
Ga0212118_1000175616	F014691	AGGAGG	MKGIGFVSAILILMFIVVAVFTLSIAWSEIPVEPQANTSIANTSNIIPTLTSFLPYIALVMILAMAIGVFLSLVRVR
Ga0212118_1000175618	F017081	GGAG	MVERGRKWWWKGVCILGTLVLFIATAQAIDITEITATETQIKITIANASSSGYIFVSPSNKSFPYAYSHQGNGTYTITATFLKPNSTYYVKACDSENCSDVVSVSVSEKEQLMSQNFTSQFNTLMQGGNLLNISKLGETIPSVYTSLLTDMFWAMFFGGIFLAYWIRQEDVMLPSIVGLISGSVLIVMLPPSAQHIAYILLVISIAGTLYTIIKARR
Ga0212118_1000175619	F055335	AGGAGG	MRAYDILLFLVCLEATIGFVSSLHVFPIDYVDASAVQTPADWNLQEVENQTASQSIFDKVMLATDMLFKALSMFFNMLVAIVAIYIPLTTVLGVPSEIALLLQGVVYVVYAWAIIQFLSGRSVKYME
Ga0212118_1000175621	F007460	AGGTGG	MGDEEGIGIGTAIFVVMLNIVFAIIFFFLVGSVMCGILPPLTSIVGIDETTPFAQALTVVPNLVNVFFYLPLVFIFTMFVWLFKYIVKRHKYTYYQKGGEEEEW
Ga0212118_1000175622	F015290	AGAAGG	MLNNKGQAGEIAVFVILVFMVAFAYIFISPIVQNIKDVVPTIADATSWTNAQTQAINWLFRAWYAFPFFAFIALLVWLIKRAIEKRSGEVV
Ga0212118_100017563	F046123	GAGG	MEAIKMSCPYKEGSEYCWLCWNWMESAEYCLYDEDDPQREFVLIDEFKNIDPQTYKERLEWIKGLGLLSLYQAVKARTVKGQRKEQRTLSDFGVVMSHE
Ga0212118_100017568	F019935	N/A	MPKIKETTNRVVVHVGNLWKRYHRASPKTKKKWIFRIKDVGRLKHSELILCKPPNGDWQTYAWSFSKKQVKKGKRKLIVYDAKAYEILQRLKEAGELRGWKLIKR