Scaffold Ga0212118_10001109

Overview

Basic Information

• Taxon OID: 3300022552
• Scaffold ID: Ga0212118_10001109
• Source Dataset Name: Guaymas_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19215
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (90.00%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Associated Families: 10

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Mexico: Guaymas Basin, Gulf of California
• Coordinates
  • Lat. (^o): 27.0078
  • Long. (^o): -111.4071
  • Depth (m): 2000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007460	Metagenome	350	N
F017081	Metagenome	242	Y
F019588	Metagenome	228	N
F019935	Metagenome	226	Y
F023017	Metagenome	211	Y
F024453	Metagenome	205	Y
F040421	Metagenome	161	Y
F056226	Metagenome	137	N
F072934	Metagenome	120	N
F091134	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212118_100011091	F091134	N/A	RSPSSSFFIQSFLAFVYLSCATAPALLNFNIKKHADIIALAAPYTVLVAFASQLPQAHGRYYECLIPFLLIPAFDEFARTRAKTTALCILAYFFFALPTLIHADLVNASLTLPITLSTAFTPLTVFAIAFALLYAYILTKSEKWRYGIALTLLAFVLIGSSATNLYNMHKISTAERECVVFNFLKQHSGEGAAFIADKEEWWANYCLCCFYAQNFLPLKIFSNTTKYLIVEKAGLDEGQKHIARLEGCCENDEVLVVEMVRWDEVKEGEKRRNEAKDS
Ga0212118_1000110912	F024453	AGGAGG	VKVEIPERDGIVMYFAILQNLAQRPDLTDLERQALDFASSLLYQSVYGEEISEVGEEGESVREEGREGDMEKVRSVHELAQVRRANAKQ
Ga0212118_1000110914	F007460	AGGTGG	MDDEEGMGMGTAIFVVMLNIVFAIIFFFLVGSVMCGILPPLTSIVGIDETSAFAQALTVVPNLVNVFFYLPLIFIFTMFVWLFKYIVKRHKYTYYQYQEEEEEM
Ga0212118_1000110916	F056226	AGGAGG	MRAYDILLFLVCLEASIGFVASIDLFSTTYVDPSAVQLTDWNVQEIQNQSSEPSLLDTATDAFVRAIPQFLNMLLAIAIVYIPLTQTLGVPTEVALLFQGAVYLIYVWAIIQFLSGRSVKYME
Ga0212118_1000110917	F017081	GGAG	MEERRRKWWWKGICILGTLILLVATAQAIDITEITATETQIKITIANASSSGYIFVSPSNTSFPYTYPHQGNGTYTITATFLKPNNTYYVKACDNENCSDVMSVNVSKKEKLVEQNFTTQFNNLMQGGNLLNISKLGETIPSVYTSLLTDMFWGLFFGGIFLAYWIRQEDVMLPSIVGLISGSVLIVMLPPSAQHIAYILLVISIAGTLYTIIKARR
Ga0212118_100011092	F023017	GAG	MRLKKEKREEMKRKILEFLKNAEGHIASIPMLARAIQASSPTAKSIVWELEVERRVSVVMLGGEYVVKLEEGGERV
Ga0212118_1000110920	F040421	GAGG	MREKRVRVITMLTLAFIIGFKSIILFLQHSFGFALALFLLAWTCICLAFPDNLIGASIGQDLKLGEVIRRWAKKRELKRK
Ga0212118_1000110921	F019588	GGAGG	MGEEERIEEEVKEVLERLKVPYSAEIVIVDDESGKVVFRWRRGRGNLVKGMQKTIEVLDRKIGIPVKDLLK
Ga0212118_1000110925	F072934	AGGAG	VVEIDIDKLLADEEIRKKMNEWNREKAKRRLETMKNLSEPHRRYLEKIASGEWKVW
Ga0212118_1000110927	F019935	AGG	MPKVKETANRTVVHVGDLWRRYYRASPKTKRRWKFRIKDVGRLRHSELILCKPPNGDWQTYAWSFSKGQVRRGRRKLLIYDAKAFEILQKLKENGDLRGWKLAFKG