Scaffold Ga0212118_10000842

Overview

Basic Information

• Taxon OID: 3300022552
• Scaffold ID: Ga0212118_10000842
• Source Dataset Name: Guaymas_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22045
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (87.88%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Mexico: Guaymas Basin, Gulf of California
• Coordinates
  • Lat. (^o): 27.0078
  • Long. (^o): -111.4071
  • Depth (m): 2000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023017	Metagenome	211	Y
F029623	Metagenome	187	Y
F035145	Metagenome	172	Y
F042112	Metagenome	158	N
F084954	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212118_1000084216	F035145	AGGAG	MSEKLSEFMRRDYNLKTIITEDEFVRTYEVICFTSNTSFPLLTLTYNRCRHEFLLTIERKFITQHSTLKALIEALENVREVMKGNACF
Ga0212118_1000084222	F084954	GAGG	LNFLRKVKNVLADKRGYNDMVIMATAIITTVVVAIIGVYISSQIYDVTNLESGSPFNTAMNAAINIMNTTFPLIVVVAIAIIAGAIMTYLLGGFGIAGGEKGKKGE
Ga0212118_1000084225	F029623	GAG	MNTYTKYVRARLEQGNLIIEVSKDAFKSDEAKKETVKELKQIIKTYFNLRFFIRLSIVYAFTALFCACVALVIVLVR
Ga0212118_1000084228	F023017	AGGAGG	MRLKKEQREEMKQKIIEFLKNVNGHIASIPMLAKVIKASPPTTKSIVGELEVEKKVKVTTLGGVYVVQLKEEVNDYE
Ga0212118_1000084233	F042112	AGAAGG	MNFNDYSPTSLPSEEEKYISKLAYPHLLFIQIQRIMDAINVGDDGKEELENLKTLLKPSWREEIDAKMEKHKKKMEQEIERISRMKEKIGIATYREMKRREIVEYVRRYVQYVIEKLDEVGLLLVEERTVLR