Scaffold Ga0212118_10000777

Overview

Basic Information

• Taxon OID: 3300022552
• Scaffold ID: Ga0212118_10000777
• Source Dataset Name: Guaymas_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22788
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 39 (90.70%)
• Novel Protein Genes: 13
• Novel Protein Genes with Ribosome Binding Sites (RBS): 12 (92.31%)
• Associated Families: 13

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Mexico: Guaymas Basin, Gulf of California
• Coordinates
  • Lat. (^o): 27.0078
  • Long. (^o): -111.4071
  • Depth (m): 2000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014691	Metagenome	260	N
F015290	Metagenome	255	N
F017081	Metagenome	242	Y
F019588	Metagenome	228	N
F023017	Metagenome	211	Y
F024453	Metagenome	205	Y
F029954	Metagenome	186	N
F035145	Metagenome	172	Y
F040421	Metagenome	161	Y
F049343	Metagenome	146	Y
F050065	Metagenome	145	Y
F055335	Metagenome	138	N
F066330	Metagenome	126	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0212118_100007771	F066330	AGG	MAEGEKRKVVVSVALSVDEYLRLEEAVMRKYGRKWGVFSKFVREAIKKAVEEVLQQQK
Ga0212118_1000077711	F050065	GGA	MNMLKATVSMEQQILLAITYLKGLLRDAKRRGDKELVRYVGEIIGVYEARLQSQNNNN
Ga0212118_1000077712	F035145	AGGAG	MLEKLSEFMRRDYNLKTIITEECCDLMRVEVICLTAKTSFPLLSLTYNKHTDNFILTIERKFITQHSTLKALIEALESVREVVKGNASF
Ga0212118_1000077714	F049343	GGAG	MTRWSRLRDKLRKGEWHIFSVVCFLAGVVAGREITLLAKPEPILALIGIGIGVLAYLLLLLTATIIADIKERRREAPKTI
Ga0212118_1000077720	F023017	AGGGGG	VRLKKEKREEMRQKIIEFLKNADGHMASIPMLARAIQASSPTAKSIVFELEVERKVTVVMLGGEYIVKLEEGGERV
Ga0212118_1000077729	F024453	AGGAGG	VKMEIPERDGIVMYFAILQNLAQRPDLTDLERQALDFASSLLYQSVYGEEISEVEEGGESGREGGGEEDMEKVRSVHELAQVRRANAKQ
Ga0212118_1000077730	F015290	AGGAG	MLNNKGQAGEIAVFVILVFVVAFAYIFISPIVQNIKDVVPVIADATSWTNAQTQAMNWLFRAWYAFPFFAFIALLVWLIKRAIEKRSGEVV
Ga0212118_1000077733	F055335	AGGAGG	MRAYDILLFLVCLEATIGFVSSLHVFPVNYVDASAVQTPADWNLQEVENQTASQSIFDKVMLATDMLFKALSMFLNMLVAIVAIYIPLTSVLGVPSEIALLLQGVVYVVYMWAIIQFLSGRSVKYME
Ga0212118_1000077734	F017081	N/A	MEERGRKWWRRGVCILGILTFLIATAQAIDITEITATETQIKITIANATSSGYIFVSPSNKSFPYAYSHQGNGTYTITATFLKPNNTYYVKACDNENCSNVMSVNISKEEKLVEQNFTAPFNNLMQGGNLLNISKLGETIPSVYTSLLTDMFWAMFFGGIFLAYWIRQEDVMLPSIVGMISGSVLIVLLPPSAQHIAYILLVISIAGTLYTIIKARR
Ga0212118_1000077737	F014691	AGGGGG	MKGIGFVSAILILMFIVVAVFTLSIAWSEIPVEPQANTSLANTSTIIPTLTSFLPYLALVVILAMAIGVFLSLVRVR
Ga0212118_1000077738	F040421	GAGG	MREEGVRAITMLTLAFTIGFKSIILFLQHSFGFAFTLFLLAWTCICLAFPDNLIGASIGQDLKLEEVIEKWERRRELRRK
Ga0212118_1000077739	F019588	AGGAGG	MGEEKRIEEEVKEVLERLKVPYSVEIVIVDDESGKVVFRWRGGRGNLVKGMQKTIEVLDRKIGIPVKDLLK
Ga0212118_100007777	F029954	GAGG	MELRTKEYKFNDGERKVEYVIPPTNTPFFSIIFGKRGEVRMIAIHQRVLEYHEAVVLMSLLCGVIKNEERIQ