Scaffold Ga0212118_10000677

Overview

Basic Information

• Taxon OID: 3300022552
• Scaffold ID: Ga0212118_10000677
• Source Dataset Name: Guaymas_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24259
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 37 (90.24%)
• Novel Protein Genes: 13
• Novel Protein Genes with Ribosome Binding Sites (RBS): 12 (92.31%)
• Associated Families: 13

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Mexico: Guaymas Basin, Gulf of California
• Coordinates
  • Lat. (^o): 27.0078
  • Long. (^o): -111.4071
  • Depth (m): 2000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007460	Metagenome	350	N
F014691	Metagenome	260	N
F015290	Metagenome	255	N
F017081	Metagenome	242	Y
F019588	Metagenome	228	N
F019935	Metagenome	226	Y
F023017	Metagenome	211	Y
F024453	Metagenome	205	Y
F035145	Metagenome	172	Y
F049343	Metagenome	146	Y
F050065	Metagenome	145	Y
F066330	Metagenome	126	N
F072934	Metagenome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0212118_1000067710	F023017	GAG	MRLKREKREEMKQRIIEFLKNADGHIATIPMLAKAIQASSPTAKSIVWELEVERKVSVVMLGGEYVVKLEEGVIKDDY
Ga0212118_1000067719	F024453	AGGAGG	VKMEIPERDGIVMYFAILQNLAQRPDLTDLERQALDFASSLLYQSIYSEEISEIGEEVKSVREEGREGDMEKVRSVHELAQVRRANAKQ
Ga0212118_1000067720	F015290	AGGAG	MLNNKGQAGEIAVFVILVFMVAFAYIFISPIVQNIKDVIPTIADATTWTNAQTQAMNWLFRAWYAYPFFAFIALLVWLIKRAIEKRSGEVV
Ga0212118_1000067721	F007460	AGGTGG	MDDEEGMGMGTAIFVVMLNIVFAIIFFFLVGSVMCGILPPLTNVVGISETSPFTQALTVVPNLVNVFFYLPLIFIFTMFVWLFKYIVKRHKYTYYQQGGGEEEW
Ga0212118_1000067724	F017081	GGAG	MEERRRKWWWKGVCIFTVLAFLIATTQAIDITEITATETQIKIIIANATSSGYIFVSPSNTFFPYAYSHQGNGTYTITATFLKVNTTYYVKVCDNENCSNVVSVNVSKEGELLEQNFTAPFNNLMQGGNLLNVSKLGEIIPSVYTSLLTDMFWAMLFGGIFLAYWIRQEDVMLPSIVGMISGVAMIGLLPPSAQHIAYILLVISIAGTLYTIIKARR
Ga0212118_1000067727	F014691	AGGAGG	MSKGIGFVSAILILMFTVVAVFTLSIAWSEIPVEPQANTSLANTSSIIPTLTSFLPYIALVVILAMAIGVFLSLVRMR
Ga0212118_1000067729	F019588	GGAGG	MSEEKRIEEEVEQILKDLKVPYSVEIVIVDDESGKVVFRWRRGRGNLVKGMQKTIEVLDRKMGLPVKDLLK
Ga0212118_100006773	F050065	GGA	MNMLKATASIEQIILAIAYLKGLLRDAKRRGDEELVKYVGEIIGVYEARLQPQNNNN
Ga0212118_1000067733	F072934	GAGG	MVEIDIDKLLADEEIREKMNEWSREKAKRRLESMKNLSEPHRRYLEKIASGEWKVW
Ga0212118_1000067735	F019935	N/A	MPKVKETANRTVVHVGDLWRRYHRALPKTKRRWKFRIKDVGRLRHSELILCKPPNGKWQTYAWSFSKGQVKKGKRKLLIYDAKAFEILQKLKENGDLRGWKLAFKG
Ga0212118_100006774	F035145	AGGAG	MLEKLSEFMRRDYNLKTIITEECCDLVRVEVICLTARASFPLLSLTYNRHTDNFVLTIERKFITQHSTLKALIEALESVREAVKGNASF
Ga0212118_1000067740	F066330	AGGAGG	MAEEEKRGKVVVSVALSVDEYLRLEEAVVRKHGRKWGVFSKFVRDAIKKAVEEVLQARSE
Ga0212118_100006776	F049343	AGGAGG	MEWSRLRDKLRKGEWYAFSAVCFIAGVVAGKGITVLGRAEPVLALTAVGAVLLAYWLALLTATIIAEIKEAPKTI