Scaffold Ga0212118_10000632

Overview

Basic Information

• Taxon OID: 3300022552
• Scaffold ID: Ga0212118_10000632
• Source Dataset Name: Guaymas_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24913
• Total Scaffold Genes: 45
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 42 (93.33%)
• Novel Protein Genes: 17
• Novel Protein Genes with Ribosome Binding Sites (RBS): 17 (100.00%)
• Associated Families: 17

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Mexico: Guaymas Basin, Gulf of California
• Coordinates
  • Lat. (^o): 27.0078
  • Long. (^o): -111.4071
  • Depth (m): 2000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007460	Metagenome	350	N
F014691	Metagenome	260	N
F015290	Metagenome	255	N
F017081	Metagenome	242	Y
F019588	Metagenome	228	N
F023017	Metagenome	211	Y
F024453	Metagenome	205	Y
F029623	Metagenome	187	Y
F029954	Metagenome	186	N
F035145	Metagenome	172	Y
F040421	Metagenome	161	Y
F046123	Metagenome	151	Y
F049343	Metagenome	146	Y
F050065	Metagenome	145	Y
F055335	Metagenome	138	N
F066330	Metagenome	126	N
F072934	Metagenome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0212118_100006321	F066330	AGAAGG	MAEEEKRKVVVSVALSVDEYLRLEEAVVRKHGRKWGVFSEFVRDAIKKAVEEVLQQQK
Ga0212118_1000063210	F050065	GGA	MNMLKATVSMEQQILLAIAYLKGLLRDAKRRGDEELVKYVGEIIGVYEARLQPQNNNN
Ga0212118_1000063211	F035145	AGGAG	MLEKLSEFMRRDYNLKTIITEECCDLVRVEVIYLTARTSFPLLSLTYNKHTDNFILTIERKFITQHSTLKALIEALESVREVVKGNASF
Ga0212118_1000063213	F049343	AGGAGG	MEWSRLRDKLRKGEWHIFSVVCFLAGVVAGREMTLLAKPEPILALIGIGIGVLAYLLLLLTATIIADIKERRKEAPKTI
Ga0212118_1000063215	F029623	GAG	MNTYAKYVRARFERGNLIVEVSKDAFKDAEAKKEATKELQQIIKTYFGIRFFIRLSIVYAFTAFFCAFVALIIVLLK
Ga0212118_1000063217	F023017	GAG	MRLKKEKREEMKQKIIEFLKNAEGHIASIPMLAKAIHASSPTAKSIVWELEVERKVSVVMLGGQYMVKLEELEEGV
Ga0212118_1000063225	F024453	AGGAGG	VKVEIPDRDAAVMYFAILQNLAQRPDLTDLERQALDFASSLLYQSIYSEEISEVGERVKSVREERREGDMDKVRSVHELAQVRKANAKQ
Ga0212118_1000063226	F015290	GAGG	MLNNKGQAGEIAVFVILAFMIAFAYIFISPIVQNIKDVVPTIADATSWTNAQTQAMNWLFRAWYAFPFFAFIALLVWLIKRAIEKRSGEVV
Ga0212118_1000063227	F007460	AGGTGG	MSDEGGIGIGTAIFVVMLNIVFAIIFFFLVGSVMCGILPPLTSIVGVDETSPFAQALTVMPNLVNVFFYLPLIFIFTMFVWLFKYIVKRHKYTYYQQGGGEEWW
Ga0212118_1000063229	F055335	AGGAGG	MRAYDILLFLVCLEATIGFVSSLHVFPVSYVDASAVQTPADWNLQEVENQTASQSIFDKVMLATDMLFKALTMFLNMLVAIVAIYIPLTSVLRVPSEIALLLQGVVYVVYAWAIIQFLSGRSVKYME
Ga0212118_1000063230	F017081	GGAG	MWKRKWWKGICIFIVLAFLITTAQAIDITHVTITSPTTIRIVIENANSSGYIFISPTNTSFPYAFSHQGNGTYTITTTFLKPAIWYFKACDNSGCSNVISVDVSAKEQLMEQNFTSQFNTLMQSGNFLNISKLGETIPSVYTSLLTDMFWAMFFGGIFLAYWIRQEDVMLPSIVGLITGSVLIVMLSPSAQHIAYILLVISIAGTLYTIIKARR
Ga0212118_1000063232	F014691	AGGA	MERRGWWIVRGIGFVSAILILMFVVVGVFTLSIAWSEIPVEPQANTSLANTSTIIPTLTSFLPYLALVVILAMAIGVFLSLVGAR
Ga0212118_1000063233	F040421	GGTGG	MREERVRAITMLTLAFVIGFKSIILFLQHSFGFAFALFLLAWTCICLAFPDNLIGVSIGQDLKLGEVIEKWVRRRELKRK
Ga0212118_1000063234	F019588	GGAGG	MGEEKRIEEEVKEVLERLKVPYSVEIVIVDDESGKVVFRWRRGRGNLVKGMQKTIEVLDRKIGVPVKDLLK
Ga0212118_1000063238	F072934	AGGGGG	MVEIDIEKLLADEEIREKMNEWVREKAKRRLESMKNLSEPHRRYLEKIASGEWEVW
Ga0212118_1000063244	F046123	AGAAGG	MCWLCWYWIEAEERCIFDEDDPEREFLLIDEFKDIDLKIYKERMEWLKGLGLMSLYRAVKAGMVKEQRTLGDFGLAVMSHE
Ga0212118_100006326	F029954	AGG	MELRTKEYKFNDGERKVEYVIPPTNTPFFSVVFGKKGEVRMIAIHQRVLGYHEAVVLMSLLCGVIKNEEGIQ