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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300022551 Open in IMG/M |
| Scaffold ID | Ga0212089_10015219 Open in IMG/M |
| Source Dataset Name | Boni_combined assembly |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5089 |
| Total Scaffold Genes | 8 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (37.50%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Sediment → Lake Sediment → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Indonesia: Gulf of Boni | |||||||
| Coordinates | Lat. (o) | -2.75 | Long. (o) | 121.05 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F030967 | Metagenome | 183 | Y |
| F079544 | Metagenome | 115 | Y |
| F102444 | Metagenome / Metatranscriptome | 101 | Y |
| F104375 | Metagenome | 100 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0212089_100152191 | F030967 | GAG | MNVEALKHLEEFEKRLKKLEKHGFEDTLTLVELLSSINFFGGLKMEKCEYAKEGQCGFFFLGSDAKKKIPIATDCRIRDCKGEQGHCHLELSNITCAFCPKAKIP |
| Ga0212089_100152192 | F104375 | N/A | VGGPLNCPQCYGALVFPNGLSGEIVCKTCGLVISRGRTSQGFTEWAPKWFSNWNENDSDTLREWLTTLRTVSCQLNLPNFPHKEETARIIRLRNDVLFRSQRFGKNKREAIAALVYLVLRKYNEMRPLKEICETLSLDYHLVMKYAWTMRKMTNFHIAFSAKDYLRKYGWKLTYNAELIQTAEQLLTSIRKEMSGNPISLAAGALYFVCKSRKMKMSKDEIGKAFHISGRTVYSNERRISRLMSTKGFKF |
| Ga0212089_100152196 | F102444 | N/A | VSILKIRGDRRALSPIFASLVILAIVTVLFVPVFIWSTGLTAETQSFWEISGLIVTERIVIEEVNLKGNVTSCTIYVRNIGRTAIIVDDIFISSDGSLHKYEKPQFSTDFDSVVQGDLMTINIPDLGFLPTSDETYTVEVYTTRGVGDTYQVVA |
| Ga0212089_100152197 | F079544 | N/A | VIEEKSLKRKFPRGRRGVSTIYTSLLSLLLVFSLLILLFLAFFSYNLAVQEQMRIEHERSQEAIVISGLILNETDLTISRVVVNNTGTIEVKIRAIYVTNSITTTLICDPSTYAERAHISPSDFLSIRLEPRVAFEPEAQIIVATERGVKTKEYEGILIFGPPKPRWKYDPSRLYIGPLMLQFDAFWYRKAFQNGTLDPNDPWHPGWSIPKGFGYCAWNITVMDIDDRNITINRFSSFTAVPNDSPSNQLTWYLEPTNVNNFTQFLPVNQTRNIVYTYSVPKRLPEEGGTNSATKMTLPECTCMVFLTFYGVFHEHDGTTTTYAQTIPFEAAITVV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |