NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212089_10008818

Scaffold Ga0212089_10008818


Overview

Basic Information
Taxon OID3300022551 Open in IMG/M
Scaffold IDGa0212089_10008818 Open in IMG/M
Source Dataset NameBoni_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6979
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (41.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Lake Sediment → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameIndonesia: Gulf of Boni
CoordinatesLat. (o)-2.75Long. (o)121.05Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F068393Metagenome124N
F102390Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0212089_1000881811F068393N/AMVLLQKLREVFPGFVDLAIRRLVEKNASRIDQLSPEELRKMKIEIEKEKPKAIENALKAFDSRPDWLWCPSSATGYREDPIDDSGVGEEGAIWKVLQRYSRPLEEIFARYGLSVGVPVVPGATITDYPLKLPYRFLEDHALKEVNVAVGEAHEGFCRAKRDVEVLERDFKETEALDIFES
Ga0212089_100088188F102390N/AMARISVAVRRHNKRQGGTHTYETTDEIVHCWQLLTKEQQSSLDDQAARNHEDLPVLLERLFKERRL
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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