Scaffold Ga0212089_10006193

Overview

Basic Information

• Taxon OID: 3300022551
• Scaffold ID: Ga0212089_10006193
• Source Dataset Name: Boni_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8534
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Lake Sediment → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Indonesia: Gulf of Boni
• Coordinates
  • Lat. (^o): -2.75
  • Long. (^o): 121.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F079543	Metagenome	115	Y
F082076	Metagenome	113	Y
F083517	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212089_100061933	F079543	GGAGG	MGNELARELAAFPFAKLKPLDFRVEIAGMSERELEKRPVKVWIETDDINSVLKIAGFARIIRSYPHLGFVYLETYARELASLVASDLVRSVWNDLPVRADGCVVTEAHPCARALATRAHGRTR
Ga0212089_100061935	F082076	GAGG	MKGTSRRALIEHLLRKHELILVRASSSESRFAALKNLERAEKRFLLSFLTSLGGGVYWLTMELWALNLSDVLTLPIHRIVSMIFGAAITAASVLAILAYLSIGLVIQRAVEIRPRD
Ga0212089_100061939	F083517	AGG	MPPEYIAALKAFAFQDGVSFAEYVRGMVHDHILERGAVFRERGAAFRALSNAGKAWVMAYYERVAVAGALPGKERRAELEKLTWNAVKKAHEFIETEDAAKNAKHRILAIQAIALITRAEEQILLDMDKAEVDEIVKRIEEILNVIDKEAAAGTPKAGKKTEN