Scaffold Ga0212089_10000962

Overview

Basic Information

• Taxon OID: 3300022551
• Scaffold ID: Ga0212089_10000962
• Source Dataset Name: Boni_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21561
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (83.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Lake Sediment → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Indonesia: Gulf of Boni
• Coordinates
  • Lat. (^o): -2.75
  • Long. (^o): 121.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007302	Metagenome / Metatranscriptome	353	Y
F032173	Metagenome	180	Y
F082002	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212089_1000096217	F082002	GAGG	MPIEVLTREELEKLVEEKIKKLLSEMEISKKISELELSTAKLRDDIARLSVKEAPVPEPEPVAAALTRDLAQRADLLEIRAAMDSVTLKPKGYLGAQDFRAVSEMVRKHGGFWSSDRRTFIVRKRG
Ga0212089_1000096221	F032173	AGGGGG	LTLTVQGGSGLISTWWLVLLIVLVVFEVGFLYGAYMSGEAGLERVFGIFTGLVLITFAVISYAARLIFYD
Ga0212089_1000096229	F007302	GGCGG	MKVQKNGTIVGIMQSEDPVKVRLHVKLDEEILAQRVKPFAPSEQQRMAQQMTENVAKQLRAAIPGALIMGPGFAGSPGPHIEQWLVPADQAAKLSIGKRVRVSLELLEE