Scaffold Ga0212091_10418092

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0212091_10418092

Scaffold Ga0212091_10418092

Overview

Basic Information
Taxon OID	3300022549 Open in IMG/M
Scaffold ID	Ga0212091_10418092 Open in IMG/M
Source Dataset Name	Cold Creek_combined assembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	557
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location Name	Cold Creek Source, Nevada
Coordinates	Lat. (^o)	36.41	Long. (^o)	-115.74	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F023539	Metagenome / Metatranscriptome	209	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212091_104180921	F023539	GGAGG	LNSKKCALLATALALPLSIGIALASDTMEKGTAIACTEVKYSSEFLERYPSAPAACLEARDTEGKRYAKFNARVFLNSADRTTVELLNVKGDRLSTFSFKPAADAGVNIDGKKVKFTDLKKGETITFWVSEDRMTASELPGATEDS

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