Scaffold Ga0212092_1010806

Overview

Basic Information

• Taxon OID: 3300022548
• Scaffold ID: Ga0212092_1010806
• Source Dataset Name: Cone Pool_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6730
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Candidatus Thermofonsia → Candidatus Thermofonsia Clade 3 → Candidatus Thermofonsia Clade 3 bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Microbial Mats → Hot Spring Microbial Mat → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.4127
  • Long. (^o): -118.504

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008994	Metagenome / Metatranscriptome	324	N
F040512	Metagenome / Metatranscriptome	161	N
F044342	Metagenome / Metatranscriptome	154	N
F049463	Metagenome / Metatranscriptome	146	N
F057955	Metagenome / Metatranscriptome	135	N
F068330	Metagenome / Metatranscriptome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0212092_101080610	F008994	AGGAG	MRVTRFAVDNNGRALFPDYFIINEQNGTALAFYSAYFDTNEIVQEGLQLTPWLSSRWRGTTVPFAQWRDAFVSVGHSFPQYHAQIAPNVRTSELVDINRAFVELFMNGVNLADPAIAETHMQLMTEKNIDLVDFLSS
Ga0212092_10108063	F044342	AGGAG	MNDPVIPVTMHLPKSVVERFKAKAVELIPEEKEEAPSLLLTLFINYMSSDDYWCLFIPDLSRQDYKKWQEMANQVYDALYETVKYHGAGALPGEMADFAQAVIQQRRMTPDDLIKLIIISARYNQITWTKNDTSKGFNVPSQ
Ga0212092_10108064	F049463	GGAG	MRRTSGRESLKQSESLSQAQVRELQSVLPKVPVYILGKTPLIHDLNAFLDQFGCQTDLTLLRPVKVWANLEEDIVNEADKVIDCFVPDDLKSLIIVVILPPLVALAAALVARLKERCPTLKVLVVHYRVEHEPHFLGFELFCG
Ga0212092_10108066	F068330	AGGAG	MNDKWIKRLNQFVESDNLIKVGIGLFLFALWAALYELGMQYNQGALLSVIVATGMVVVLVAHGIMACQPVPQMRLAHGSAFALHMVIAIALSAFYVLSKAPELERQVVNLIGEFVTLGRTFYAALFGIAIAISLSAYIVSLSAKNPVTGSQQAIASLATNIAIVLAIITSSIHLYQFGAEIANLDLLSRLSATIMADISFIAIKSNIQHQIERRQKSGQYDYFDLIVWAVFGILVSIYLILINSFVVSYSAGTARDSSLLSLVVSLYGMSPTVLLAGLASLTVLTKVVDRQTASPKSNGQRLDEFAANGIAGRQGVKV
Ga0212092_10108068	F040512	AGAAGG	MIDLISTASVAGLSVLSARYLEHAAWFQRLQPESKRLVAVAVAALIALALHMLQAIYSEASDIKAAFSTALAVVLQQVYHALTKEDAE
Ga0212092_10108069	F057955	N/A	MIDLFEFFSNYGVLGITALISMSLSLWLLRENQKTLDQCNARVDKLIETHIRFVENVTDKMDELLNDISRLIEKAEITISELERAAKKGNE