Scaffold Ga0212119_1079158

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0212119_1079158

Scaffold Ga0212119_1079158

Overview

Basic Information
Taxon OID	3300022543 Open in IMG/M
Scaffold ID	Ga0212119_1079158 Open in IMG/M
Source Dataset Name	Indian_combined assembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	522
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location Name	USA: Indian Creek, Illinois
Coordinates	Lat. (^o)	41.6655	Long. (^o)	-87.5437	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F040583	Metagenome / Metatranscriptome	161	Y
F054790	Metagenome / Metatranscriptome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212119_10791581	F054790	AGGA	MSELNKAWRDIYYMLEDNAFDYVGKPFYNDKEGTIQLWNGSSFITYAEVPF
Ga0212119_10791582	F040583	N/A	YIVNLTNGQAVRVESAGDPTDHPTFWGRVESVETLGMVGLHLV

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