Basic Information | |
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Taxon OID | 3300022543 Open in IMG/M |
Scaffold ID | Ga0212119_1054495 Open in IMG/M |
Source Dataset Name | Indian_combined assembly |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 629 |
Total Scaffold Genes | 2 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Indian Creek, Illinois | |||||||
Coordinates | Lat. (o) | 41.6655 | Long. (o) | -87.5437 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F003290 | Metagenome / Metatranscriptome | 495 | Y |
F029675 | Metagenome / Metatranscriptome | 187 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0212119_10544951 | F003290 | AGGAG | MTNPTSNFGWQMPTSTDLVTDLPADFEVFGQAVDTSLADLKGGTTGQVLS |
Ga0212119_10544952 | F029675 | N/A | NQSQHEQSASDADSILQYGTLSQIISTTLHDSADATQQANFYLALRKTPQAIFSEITFDLTNPELDDSDRDNLIGVFMGEALAINDLPANMGGIFQGFVEGWSFQASYNQLSITLNISPVAYSLQALQWDEISAAFTWSGVSPTLDWARATIVV |
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