Scaffold Ga0212119_1012640

Overview

Basic Information

• Taxon OID: 3300022543
• Scaffold ID: Ga0212119_1012640
• Source Dataset Name: Indian_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1560
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: USA: Indian Creek, Illinois
• Coordinates
  • Lat. (^o): 41.6655
  • Long. (^o): -87.5437

Associated Families

Family	Category	Number of Sequences	3D Structure?
F049561	Metagenome / Metatranscriptome	146	N
F096905	Metagenome / Metatranscriptome	104	N
F098924	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0212119_10126401	F049561	AGGAGG	MTKIRVELEETDLFNAVKKIIDHPNRVEIAKVLTSIIAPHEKVSSIFFKTYFGGAAPQVLPEGTMITVNPNRLSYKTNVDGMKRIGLLNISGHATAIIKEFRGFHESHNYYVNFMNVDDNDKSYED
Ga0212119_10126402	F096905	N/A	MESKIFTSVIGFDFKLDLVDNDGQPIKTGARRIDYLSSETPNVGTKIGGESWFTNFNEPLLNKIRDYRRRND
Ga0212119_10126403	F098924	N/A	MLGKLFNRKKTYPKDNRFEVLIIGEDKTDFQEMLGITDKRKDELLKLAFKSYKDHELYTTSCKVAVAECTHINEVVFLMTMLTKIRELESNPLSSLLSHLTHGE