Scaffold Ga0212119_1007890

Overview

Basic Information

• Taxon OID: 3300022543
• Scaffold ID: Ga0212119_1007890
• Source Dataset Name: Indian_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2232
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: USA: Indian Creek, Illinois
• Coordinates
  • Lat. (^o): 41.6655
  • Long. (^o): -87.5437

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010462	Metagenome / Metatranscriptome	303	Y
F043354	Metagenome / Metatranscriptome	156	Y
F076942	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212119_10078901	F043354	N/A	MIKMEKLKQDVSHYQLYAGKTYMQYEQDKYSIYQNYLYKRALYGLESLTEKELATICSKKKQRINNVYKRAQTVLNTLKQKLTIKYSNDIFQRFFPNSKMTQDILNYSEIDEKYKN
Ga0212119_10078902	F076942	GAG	MNSKVIVLAEETTGAVVNVSQNNSDYGYIRVQQVRTMIDDNGFLRRKPVSALIPGSVSELQETGFFAGQQLDGKIIVEESLEPFNDKTPERDLKIAGETGVVCTLGGLPIYRRTKFSFDSNGADSLIKHDNVEQLRAAYSAQNAKSTAIQPNDDFSIGG
Ga0212119_10078903	F010462	N/A	MLYQLPNGKVVHLSIEEYLDLTDEDIQYLMSLDFGEHIQNPFTGSAVDKNIKEKYYDFEFLPEDDEEINNIISDDVPFDDIIDLSSPTE