Scaffold Ga0212119_1005449

Overview

Basic Information

• Taxon OID: 3300022543
• Scaffold ID: Ga0212119_1005449
• Source Dataset Name: Indian_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3005
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: USA: Indian Creek, Illinois
• Coordinates
  • Lat. (^o): 41.6655
  • Long. (^o): -87.5437

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004840	Metagenome / Metatranscriptome	421	Y
F011487	Metagenome / Metatranscriptome	290	Y
F025743	Metagenome	200	Y
F045756	Metagenome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212119_100544911	F045756	N/A	YNVLVSYVVEAEDEMRAVFALNKTLYPLSENEIAKFNAFHIEEVQE
Ga0212119_10054492	F011487	AGGAG	MANMYEDEMFDEYYSTTCPECQENAVDAYEEKCTHCLLEEMSAHYNEDIALEMSLGLDY
Ga0212119_10054493	F025743	GAGG	MSDTITSMELVFADLLTPSQLMEGDLIKIEDDIVEVISIADDATGDNYTITYRNDYGDTEEYSCNYEDVFKFYVVVETEEE
Ga0212119_10054495	F004840	GGAGG	MDYEYLITCAYDGNEPHWEQRYENEYGAWENFFLFTDWGMASEYSTVNLYTPTGKCYTKLFYRNGKVVVK