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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300022543 Open in IMG/M |
| Scaffold ID | Ga0212119_1002183 Open in IMG/M |
| Source Dataset Name | Indian_combined assembly |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 6068 |
| Total Scaffold Genes | 13 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (23.08%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Indian Creek, Illinois | |||||||
| Coordinates | Lat. (o) | 41.6655 | Long. (o) | -87.5437 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000716 | Metagenome / Metatranscriptome | 923 | Y |
| F028489 | Metagenome / Metatranscriptome | 191 | Y |
| F047578 | Metagenome / Metatranscriptome | 149 | Y |
| F060730 | Metagenome / Metatranscriptome | 132 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0212119_100218311 | F060730 | GAGG | MKEVYMRIMHENDGQVPEEMTIADMAHMKELEIYNWEEYEREQEKLRLFRVKQKDSREIVKVAQTREYWEKELYAGKIRRLKKD |
| Ga0212119_10021833 | F000716 | N/A | MIKPMYIMEKLKKQVRNYQLYAGKTYVQYEQDGFTAYQNYLYKRALYGLDALTEKELATMCSKKKQRIINVYKRAQVTLNKFKQQLTISYSNLIFETLFPNSPMTQFLLADTETDEKFKNTLTFKDLGIEKQDIIAIFIAEGILPKNFLDLKDAPLALPRLKYEVKA |
| Ga0212119_10021835 | F028489 | N/A | MIMRMIGKEIKIKHTNTYSKFAILPMNRGIDSKHVQKMILSIRKMDVLRCVIACTTNIIEGEWKTYIIDGQHLATALEREGQLIPYIEITIESEEDLVEKMALLNNSSKSWDLMNFINAWKMIRPDYMKLFKWKNMYDIEVSMLACIASNMPSIRFGTQPIKKGTFQITNPKAEDMCKAFNDIFLKIGMADRSVKFQFLNAFMQAYNSTYSHIKVMAAIDKHMKTIKLMASGDETGTYIRKQIFKLPK |
| Ga0212119_10021839 | F047578 | GGA | MKAICIDSSNKPAKIPIEQWIKQGETYTIIKVVKMGLQDGRYGVLLKEVQMSADCFPYEYYDADRFIPLDTRVLNMEEETVKEADLELI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |