NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212119_1001334

Scaffold Ga0212119_1001334


Overview

Basic Information
Taxon OID3300022543 Open in IMG/M
Scaffold IDGa0212119_1001334 Open in IMG/M
Source Dataset NameIndian_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8527
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (11.11%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameUSA: Indian Creek, Illinois
CoordinatesLat. (o)41.6655Long. (o)-87.5437Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003038Metagenome / Metatranscriptome511Y
F032245Metagenome / Metatranscriptome180Y
F044374Metagenome / Metatranscriptome154Y
F065559Metagenome / Metatranscriptome127Y
F078606Metagenome / Metatranscriptome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0212119_100133411F078606N/AMIRFKLFLVAAIGTLVSWLFIKTLLIEVSLIQFLAIELIVGLSHYIYNDVKSKLTT
Ga0212119_100133412F032245N/AMQEVFSKILQQKLTPNGMYVLFCIKEKVKCSDSVNFNLEVLKLKSGNYLTEDLQLSDNTLKFIEEIEGYFKKSKKKTSKNLMGDDFLDNIKTYNECFPATKLPSGVYARVNIKSLENAFRWFFETFDYSWETVIQATEKYVEEYSINRYNYMRNSQYFVRKQNTDKTWDSTLATYCDMISQDDYEAPVFFKEKIV
Ga0212119_10013344F065559AGAAGMPISLAGFTKSNSMKEMDMIGTLVRLADLGVTGIKVTYEGSGDSGAIENVVYTAEKLKENEEDAFEDLNDLDVWGTDILNLSTLDSGLESDIAHFVEEQLLNDIEDWWNNDGGYGNVCILVPSGKYKIVNDIRVTEVETFYHEGSLIQKTL
Ga0212119_10013347F003038N/AMALSTTDLGTAGSGLPKTITPGNHVLKINSIELEEFKFIPGAYHLMLHVETAPIEGFEGFMIDKDDESKGRYQGQIGRVKASQYAFADGETKTGIKIQRDRSILIFLRTLAHTLQLDSWFVEQDGKHETIEDFVKEFSKTADFREKYLEFCVAGKEYEGKTGYTNYDMWLPKAEGKKYAFGAEQDDVVIVYNETKHLKKLEVKEVKSFGDEDDVFHKPKTSSDFSLD
Ga0212119_10013349F044374N/AMTRKEKEKEFFAYHMDKFRKAEISNPFFTLKTAFFQKGKYGRQVQLFEGELKRGEDIFIEFIDVNRDVNGKEIGIESAFEERPLFKYKSNPYFAEEYDVKEGTNSMGENYFAYTIPLSELMVIMPDGSEITYNLYEKRKAEAPKEQISLSVFPDFEDEFVPKLKDVSLDAEDSVSDILLRIAKDFEKLAQTLKA
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