Scaffold Ga0212119

Basic Information
Taxon OID	3300022543 Open in IMG/M
Scaffold ID	Ga0212119_1000152 Open in IMG/M
Source Dataset Name	Indian_combined assembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300022543 Open in IMG/M

Scaffold ID

Ga0212119_1000152 Open in IMG/M

Source Dataset Name

Indian_combined assembly

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	29772
Total Scaffold Genes	52 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (13.46%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

29772

Total Scaffold Genes

52 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (13.46%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location Name	USA: Indian Creek, Illinois
Coordinates	Lat. (^o)	41.6655	Long. (^o)	-87.5437	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Indian Creek, Illinois

Coordinates

Lat. (^o)

41.6655

Long. (^o)

-87.5437

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002018	Metagenome / Metatranscriptome	603	Y
F022635	Metagenome	213	Y
F024267	Metagenome / Metatranscriptome	206	Y
F028780	Metagenome / Metatranscriptome	190	N
F030696	Metagenome	184	Y
F047006	Metagenome / Metatranscriptome	150	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212119_100015217	F002018	N/A	MISYQALINEIIAFYNAHLQVKKVGSDFKEQLFNFATKDEKYPIVYIVPIDAIPTDNTNDFTLEIYCFDIIQKDRANINTILSDCHQILMDLYLNYTFNLDDRDFDVVGFPALVPLNNDLLDYAAGWLMTITFTMDSWTDCQIPKQIAD
Ga0212119_100015218	F022635	N/A	MARYKNTGEYNYKYPLRRRVANTLKKVIKDEALIDTYTLYDSVRINAKVTTEGNIRIEILAAYYFGYLNNGTESIAPFRLVRKFNDALEMNGLIGEMYGMYVADLAQRFPILELGNLLRRKPKVIYDFVPLYGDFNYALDY
Ga0212119_10001522	F024267	N/A	MKIEITHYGHKASYEFDHEDVTLEDLLFHLEKLIWLTGYSINGRLEIVNEEQ
Ga0212119_100015230	F030696	N/A	MNFKSLFLLILVTSCTANYHLTKAIKKGYRCDSVADTIRITSVDSFPVIVDNKIVYEYYHTTKDTIVRYKTSFVPQTRWQTRIEYKLKRDTIRQVQKIEVAKYKSQKDKPTFWVLILGFVVGMGTMYLFKYSKNYL
Ga0212119_100015252	F047006	N/A	MSIKSKLKICDGCGLERPIWKSGGTGGFKYCKYCWSCQKAINSDSS
Ga0212119_10001526	F028780	AGGA	MKATLDRYISSHYEELYRYTRYFCSKYNPKLTIDTVISNAYLHCIEINDNTEDVGKVKSYILNSIKRQVIWKNVDSYKDERILASEIAVPDTFDDGEDLNYKIAIEQQYQGWKSSVDIYRDGLTDNVKIAVAKAYFDKNFTTARSMAEYFNIPVTSAHYLIADIKTTLKIIHNEDKK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0212119_1000152

Overview

Ecosystem & Geography

Associated Families

Sequences