NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224452_1018671

Scaffold Ga0224452_1018671


Overview

Basic Information
Taxon OID3300022534 Open in IMG/M
Scaffold IDGa0224452_1018671 Open in IMG/M
Source Dataset NameGroundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_b1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1912
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9201Long. (o)-106.9487Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000580Metagenome / Metatranscriptome1010Y
F002134Metagenome / Metatranscriptome590Y

Sequences

Protein IDFamilyRBSSequence
Ga0224452_10186712F002134AGGVDVVFEVASERYPLEEQAATLMAENLRVKAAHKPGAEGAAGARPIADAIELRLIEDRDDPISLGGDGAEAVYYALSVPNGDSDQLRALYQAVKGLHDERLHQKS
Ga0224452_10186714F000580N/AQLADLTQTVEQMADRLKAFGERADSQQRRADSQQEDTEIQQERIDLAARELAEVSDRLHAAANALRASI

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