Scaffold Ga0224452_1016190

Overview

Basic Information

• Taxon OID: 3300022534
• Scaffold ID: Ga0224452_1016190
• Source Dataset Name: Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_b1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2024
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9201
  • Long. (^o): -106.9487

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045028	Metagenome / Metatranscriptome	153	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0224452_10161904	F045028	N/A	HMTSNRIFVRRLIPLMLLAASCSDPSPTGADLATPGLLAGKTKAAGSSLVACGKLPYDSVSRVIGPAGGWFVVGANVLWVDSLALSAPVTITAVAPSDTVRRVRLRPEGLVFKTGTHGLGAVMATTLDNCTLRHNALPRIANVTDALTVVEYLASPAPAVDSLIVMRFRTDSTGWTPYWAFGALRHFSNYAVAW