Scaffold Ga0224452_1004178

Overview

Basic Information

• Taxon OID: 3300022534
• Scaffold ID: Ga0224452_1004178
• Source Dataset Name: Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_b1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3478
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9201
  • Long. (^o): -106.9487

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005921	Metagenome	386	Y
F008703	Metagenome / Metatranscriptome	329	Y
F010677	Metagenome / Metatranscriptome	300	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0224452_10041783	F005921	N/A	MARVSGLEKEKAPWHLRWFYGVMRKMFRKDFTPAKIQMRLPALVWGGIAMEAALGRKRLVSLRYMQLGKVRAAARIGCPF
Ga0224452_10041787	F008703	GAG	MSKLQDALNQIKDPTVADAKTQFEQLINEGKAASEAFIQSSAQQLEQWTIDVSNKKMSQDEFDNLVSSQTILAKNFVASQALAAQERAEKLTIKTAELAATKIVPLLLVAL
Ga0224452_10041788	F010677	N/A	MFKHPRFFPKPFSVAAFVTALLLCSCATISKPSSQVRVQQLKDAHLAFIDHYTCVEGTPATWDQASFDSEVAKITQLFTDAEAAESKTVPARKEFIKNSAKLFQRDAALVRKQHCLSSSFAANKKKQLQQNYDLLLQQTSN