Scaffold Ga0224452_1001861

Overview

Basic Information

• Taxon OID: 3300022534
• Scaffold ID: Ga0224452_1001861
• Source Dataset Name: Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_b1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4888
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9201
  • Long. (^o): -106.9487

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015316	Metagenome / Metatranscriptome	255	Y
F045028	Metagenome / Metatranscriptome	153	Y
F082428	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0224452_10018614	F015316	GAGG	VKSADTGLVRCAQTYDSVTQVIGPAGGLIAVGHHYLWVDTMALADTVSITAVAPADTLRRVRFQPDGLQFRTNGAGRSAILYTTYKDCGVPTSDTLRIAQVTDSLGILGYLETYAQVRRKSWSQGNQYVYGVLHHFSQYGVAW
Ga0224452_10018615	F045028	AGGAG	MTSHRIFVRPWLIALVVVASSCSDPSPLGVGPGVPGLLAGKVKSTTPSFVQCSPVAYDSVSKVIGPAGGWFVVGANVLWVDSLALSSPVKITAVAPSDTIRRVRLHPDGLQFKTGTHGLGAVVATSLDNCRLRKNTIPRIANVTDSLALLEYVESPAAAVDSMLIARFRTDSGGWTPYFAFGALHHFSNYAVAW
Ga0224452_10018616	F082428	N/A	SFKDCGLPTSDTLRIAQVTDSLRVIRYLAPPDSTWIKVKKNAWSQGAQYVAGVLHHFSQYAVSW