Scaffold Ga0242662_10039826

Overview

Basic Information

• Taxon OID: 3300022533
• Scaffold ID: Ga0242662_10039826
• Source Dataset Name: Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-7-M (Metagenome Metatranscriptome) (v2)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1172
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037328	Metagenome / Metatranscriptome	168	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0242662_100398262	F037328	GGAGG	MSIATSERQPALTGHRRFGTAVSHSPLTIGLGFAAAIAVGLLIAPRDNRSPGQPANLDSPHPFLTQVKASVDPLTHWQPRSGQIRITLESTGNANLADSNLSVYFRWRTKSNTGEWTRTPNVHVVDLQNAQKLTVAAEVPELPPAPSNGLLGRISGNGNGVGEFLGLVPVAEVWVSARANGNGGDAALADVVESIGITNTWVA