 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300022533 Open in IMG/M |
| Scaffold ID | Ga0242662_10006944 Open in IMG/M |
| Source Dataset Name | Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-7-M (Metagenome Metatranscriptome) (v2) |
| Source Dataset Category | Metatranscriptome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2124 |
| Total Scaffold Genes | 2 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → unclassified Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter sp. SbA7 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Massachusetts | |||||||
| Coordinates | Lat. (o) | 42.481016 | Long. (o) | -72.178343 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F007988 | Metagenome / Metatranscriptome | 341 | Y |
| F089214 | Metagenome / Metatranscriptome | 109 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0242662_100069441 | F089214 | GGAGG | MVKSPLARILLCLVVLALIGVTALALGTKSNFITTNNGRLAIATKGPSAVTPRDINRDAGLKTISGNLSTYPFGTFFCCFGNTIAQEGSNGFPFTTWVAIPFTPAANATVTRIEASVGTFGGTSEFELSLREDNVGLPGKPIKSFHITAPPTYGACCTLDVGNDKAGIALTAGTQYWIAATTTAKDVFEGGWAFNSTDMRSHAIASYCKGPSTYCGTTNNGKWVAGQSGDPLPAYAVLGN |
| Ga0242662_100069442 | F007988 | GGAGG | MRKKILLTLTVLALASVTALAANKDGIVTTKDGRMTIATKPTKSVTRTEPNDPSLVKIFDNIGTAYPKGAYWCCEGFTITGPTAISGFPEFWSAAAFTPTANHTVTKIEVAVGYVEGTNGLTLALYSDASGVPGKAIKSFAVSNLPNFGSCCTVVAATDNAGIAVTAGTQYWVVMRTAAKTSNTYAAWNVNDTDEVDSAPAAQYCSDDKGGSCGTNDAWSAFSSTPGLAFAVLGK |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |